View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_24 (Length: 446)
Name: NF21284_low_24
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 28187927 - 28187712
Alignment:
| Q |
18 |
cacagaggtgacaacaaagcttgataagaatttcacacacaatcatccactctaggatttccattccccctttcatttgattccattttcaacaccttca |
117 |
Q |
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| T |
28187927 |
cacagaggtgacaacaaagcttgataagaatttcacacacaatcatccactctaggatttccattccccctttcatttgattccattttcaacaccttca |
28187828 |
T |
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| Q |
118 |
cacccattatgtaaacttcctttgttttattcctggctttactctcagcaatttgatcccaaagggtcaccattttcaaggtattttcctctcttgattc |
217 |
Q |
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| T |
28187827 |
cacccattatgtaaacttccttcgttttattcctggctttactctcaacaatttgatccaaaagggtcaccattttcaaggtattttcctttcttgattc |
28187728 |
T |
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| Q |
218 |
aattcgggatcttaaa |
233 |
Q |
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| T |
28187727 |
aattcgggatcttaaa |
28187712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 28187633 - 28187522
Alignment:
| Q |
313 |
gggggaggtaaaaaagttagagaattagagtgattcctggattgtattattggccagtatctgtattagttattaactgcatattttgattgaaactgta |
412 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28187633 |
gggggaggtaaaaaagttagagaattagtgtgattcctggattgtattattggccagtatctgta----ttattaactgcatattttgattgaaactgta |
28187538 |
T |
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| Q |
413 |
ttgagcttgttataat |
428 |
Q |
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|||| |||||||||| |
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| T |
28187537 |
ttgattttgttataat |
28187522 |
T |
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