View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_25 (Length: 441)
Name: NF21284_low_25
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 40228008 - 40228432
Alignment:
| Q |
1 |
atcattcagattcaaggttaaaatggactaagtgtgtgcccctttttagaacaagttaagatttagagctattaagacaaagtgtcatgctcacgatgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40228008 |
atcattcagattcaaggttaaaatggactaagtgtgtgcccctttttagaacaagttaagatttagagctattaagacaaagtgtcatgctcacgatgta |
40228107 |
T |
|
| Q |
101 |
gtttactgtctttgtggcatgctctcaatagttacataagattctaaggatcaagcctatatcacccaatccatctaagtgacaacaaaaaactaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40228108 |
gtttactgtctttgtggcatgctctcaatagttacataagattctaaggatcaagcctatatcacctaatccatctaagtgacaacaaaaaactaagata |
40228207 |
T |
|
| Q |
201 |
atcattaaacaaaacgaaaagtaataannnnnnnnatgcaaaatatactccatttcatatatattaataaagaaagaaaataaaatcctaatagtgacaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40228208 |
atcattaaacaaaacgaaaagtaataattttttttatgcaaaatatactccatttcatatataataataaagaaagaaaataaaatcctaatagtgacaa |
40228307 |
T |
|
| Q |
301 |
tttcatacaatttatatatgattattacaccattgtttgaaagagacatgagagccatctagcttgacacgaaagcaagaccagattttagtagtcgcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40228308 |
tttcatacaatttatatatgattattacaccattgtttgaaagagacatgagagccatctagcttgacacgaaagcaagaccagattttagtagtcgcca |
40228407 |
T |
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| Q |
401 |
tatacaatttacacaactttgaaaatg |
427 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
40228408 |
tatacaattt--acaactttgaaaatg |
40228432 |
T |
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