View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_26 (Length: 440)
Name: NF21284_low_26
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 1241438 - 1241026
Alignment:
| Q |
18 |
acaatgatctcatgttccctttattcttaacttcaagctgaacaatacagctgaaaagtgaactctcacaagacaaagcaaggtgttcctgccttttcta |
117 |
Q |
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| T |
1241438 |
acaatgatctcatgttccctttattcttaacttcaagctgaacaatacagcttaaaagtgaactctcacaagacaaagcaaggtgttcctaccttttcta |
1241339 |
T |
|
| Q |
118 |
tgtctcttctcaatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactatttgccatcttacttctatagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
1241338 |
tgtctcttctcaatcactagttttatttcctaaaactcacaataataataataacaacaaaatcaacccaaaaaactattttccttcttacttctatagc |
1241239 |
T |
|
| Q |
218 |
atctcaaaacatcccataattaatgtctcataaaaattaaccaattttagtctcaagaattgaacatcttctacaannnnnnnnnnnaaaaaactcaata |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1241238 |
ctctcaaaacatccca----taatgtctcataaaaattaacctattttagtctcaagaattgaacatcttctacaa-tttttttttaaaaaaactcaata |
1241144 |
T |
|
| Q |
318 |
tgaaaccttcaacagaatcaaccaaggacacagccattgacattgataattcatcttccaaaagagtatctttctctgaccaacagcaacagcaccaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241143 |
tgaaaccttcaacagaatcaaccaaggacacaaccattgacattgataattcatcttccaaaagagtatctttctctgaccaacagcaacagcaccaaca |
1241044 |
T |
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| Q |
418 |
caatgttcctttgctact |
435 |
Q |
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||||||||||||| |||| |
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| T |
1241043 |
caatgttcctttgttact |
1241026 |
T |
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