View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_28 (Length: 409)
Name: NF21284_low_28
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 2066061 - 2066440
Alignment:
| Q |
11 |
atcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2066061 |
atcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggcatcagaggttgctaaatcagaagaaag |
2066160 |
T |
|
| Q |
111 |
tatgcgccgacaaacattaataattgatgaaaatctaagacactgagtgtatcaccatatatactgtgtaccaacatctttgagttcatctcaaaatcca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2066161 |
tatgcgccgacaaacattaataattgatgaaaatctaagacactgaatgtatgatcatatatactgtgtaccaacatctttgagttcatctcaaaatcca |
2066260 |
T |
|
| Q |
211 |
cattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaagtaacaatgataacccctctcttta |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
2066261 |
cattggttagctgaagatcatatatccattgaagagcatatacttgtttgagtgtctctcctaaatcaacatcaagtaacaatgataatcactctcttta |
2066360 |
T |
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| Q |
311 |
agccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagagcatc |
390 |
Q |
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| T |
2066361 |
agccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagagcatc |
2066440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 290
Target Start/End: Complemental strand, 43234121 - 43233918
Alignment:
| Q |
87 |
agaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattgatg-aaaatctaagacactgagtgtatcaccatatatactgtgtaccaac |
185 |
Q |
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| T |
43234121 |
agaggtttttaaatcagaataaagtaggtaccgacaatcat-aataattgaagcaaaatatgagacaacgaatgtatgaccatagatacgggctacaacc |
43234023 |
T |
|
| Q |
186 |
atctttgagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaa |
285 |
Q |
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| |||||||| ||||||| ||||||||||| |||| || | ||| ||| |||||||||||||||| || |||||| |||||| ||| ||||| ||| |
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| T |
43234022 |
acctttgagtccatctcacaatccacattgaccagctaaaagccatgtattcattgaagagcagacaacagtctgagtgcctctcccaaaccaacaacaa |
43233923 |
T |
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| Q |
286 |
gtaac |
290 |
Q |
| |
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||||| |
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| T |
43233922 |
gtaac |
43233918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 386
Target Start/End: Original strand, 15076965 - 15077163
Alignment:
| Q |
188 |
ctttgagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaagt |
287 |
Q |
| |
|
|||||||| ||||||||||| |||||| || |||||||||||| | ||| ||||||||| | | || |||||| |||||| ||||||||||||||| |
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| T |
15076965 |
ctttgagtccatctcaaaatgcacatttgtcagctgaaggtcacgaacccactgaagagcaaaaaacagtctgagtgcctctcccaaatcaacatcaagt |
15077064 |
T |
|
| Q |
288 |
aacaatgataacccctctctttaagccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagag |
386 |
Q |
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|||||||||| | ||| || |||||||||||||||| | |||||||| |||| | |||| ||| ||||||||||||||| |||||||||||||| |
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| T |
15077065 |
aacaatgatagctactccacttcagccaacacaaaacgaccttcatcatctcgaatatatatacaaaggccaactttgtttaacacatgagagaaagag |
15077163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 2806804 - 2806850
Alignment:
| Q |
91 |
gttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
137 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
2806804 |
gttgctaaatcagaagaaagtaagcgccgacaatcattaataattga |
2806850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 16349583 - 16349657
Alignment:
| Q |
63 |
ttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
137 |
Q |
| |
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|||||| |||| |||||| ||||||||||| |||| |||| |||||||| |||||||| ||||||||||||| |
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| T |
16349583 |
ttgtctcctaacaaatctaacatcagaggttgtcaaattagaataaagtatgtgccgacaatcattaataattga |
16349657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 28031267 - 28031198
Alignment:
| Q |
317 |
cacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagag |
386 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
28031267 |
cacaaaacgatcctcatcatcccgaatacacataccaaggtcgactttgtttaacgcatgagagaaagag |
28031198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 652033 - 651977
Alignment:
| Q |
311 |
agccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtt |
367 |
Q |
| |
|
||||||||||||| || |||||||||| | |||||||||||||| |||| |||||| |
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| T |
652033 |
agccaacacaaaatgaccctcatcatctcggatgcacataccaaggccaaatttgtt |
651977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 252
Target Start/End: Complemental strand, 34899087 - 34898897
Alignment:
| Q |
63 |
ttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattgatg-aaaatctaagacactgagtgta |
161 |
Q |
| |
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|||||| |||||||| || |||||| |||| ||||||| ||||||||| ||||||||| ||| ||||||||| | ||||||| ||||| ||| ||| |
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| T |
34899087 |
ttgtctcctaataaacctaacatcagaagttgttaaatcaaaagaaagtagacgccgacaaccatcaataattgaagcaaaatctgagacatcgagcgta |
34898988 |
T |
|
| Q |
162 |
tcaccatatatactgtgtaccaacatctttgagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagaca |
252 |
Q |
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|||||| ||||| | ||||| | ||||||||| | ||||| |||||| ||| ||||||||||||| ||||| |||| ||||||||| |
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| T |
34898987 |
cgaccatagatactctctaccactacatttgagttcgtttcaaattccacaatggcgagctgaaggtcatgtatccgttgatgagcagaca |
34898897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 27764016 - 27763941
Alignment:
| Q |
259 |
tgagtgtctctcctaaatcaacatcaagtaacaatgataacccctctctttaagccaacacaaaacgatcctcatc |
334 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| | |||| ||| |||||| ||||||||| ||||||| |
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| T |
27764016 |
tgagtgtcttccctaaatcaacatcaagtaacaatgatagtcactctgttttagccaatacaaaacgaccctcatc |
27763941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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