View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_29 (Length: 404)
Name: NF21284_low_29
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 2580779 - 2581156
Alignment:
| Q |
10 |
ataattctacaacgaaagataaaataaagtcggactataatcatatataaaataaattattttcataaactatactagagagctaattatgataatggtt |
109 |
Q |
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| T |
2580779 |
ataattctacaacgaaagataaaataaagtcggactataatcatatataaaataaattgttttcataagctatactagagagctaattataataatggtt |
2580878 |
T |
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| Q |
110 |
aaaaacgacttattaacatgtcatcggagtcggaccaagcataaattgtatgacataacaaattgatgatttacattgtctggtgcacatcaatataact |
209 |
Q |
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| T |
2580879 |
aaaaacgacttattaacatatcatcggagttggatcaagcataagttgtatgacataacaaattgatgatttacattgcctcgtgcacatcaatataact |
2580978 |
T |
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| Q |
210 |
cccattttaaatgatttatgtatgttttttcttaaagtgnnnnnnnnnnnncaaacgtaaggtannnnnnnattttaaataatttcgtggtgctcgtaag |
309 |
Q |
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| T |
2580979 |
cccattttaaatgatttatgtatgttttttcttaaagtaaaaaaataaaaacaaacgtaaagta--tttttattttaaataatttcgtggtgctcgtaag |
2581076 |
T |
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| Q |
310 |
tttttatctttttcacatggacaaaacaacattgctcaattagttatattgttatttattcaatttcaatggaaaaagtg |
389 |
Q |
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| T |
2581077 |
tttttatctttttcacatggacaaaacaacattgctcaattagttatattgttatttattcaatttcaatggaaaaagtg |
2581156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 30552713 - 30552681
Alignment:
| Q |
61 |
ataaattattttcataaactatactagagagct |
93 |
Q |
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| T |
30552713 |
ataaattattttcataaactatcctagagagct |
30552681 |
T |
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