View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_3 (Length: 845)

Name: NF21284_low_3
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_3
NF21284_low_3
[»] chr6 (3 HSPs)
chr6 (16-833)||(19746788-19747605)
chr6 (712-764)||(33568839-33568891)
chr6 (702-764)||(33576015-33576077)
[»] chr5 (4 HSPs)
chr5 (17-310)||(23085897-23086190)
chr5 (707-833)||(23086632-23086758)
chr5 (507-560)||(23086420-23086473)
chr5 (420-462)||(23086318-23086360)
[»] chr7 (8 HSPs)
chr7 (720-833)||(23999554-23999667)
chr7 (715-815)||(24021626-24021726)
chr7 (709-751)||(24016641-24016683)
chr7 (701-751)||(26237458-26237508)
chr7 (701-751)||(26256619-26256669)
chr7 (26-79)||(26255963-26256016)
chr7 (19-131)||(15507893-15508005)
chr7 (28-138)||(26236014-26236124)
[»] chr3 (3 HSPs)
chr3 (702-833)||(36339960-36340091)
chr3 (702-767)||(25901439-25901504)
chr3 (702-752)||(25915472-25915522)
[»] scaffold0707 (1 HSPs)
scaffold0707 (712-764)||(5233-5285)
[»] chr8 (9 HSPs)
chr8 (717-833)||(11338670-11338786)
chr8 (717-833)||(11345195-11345311)
chr8 (509-585)||(11345431-11345507)
chr8 (12-116)||(11345954-11346058)
chr8 (717-833)||(11359073-11359189)
chr8 (509-585)||(11359309-11359385)
chr8 (510-585)||(11338905-11338980)
chr8 (721-833)||(11339513-11339625)
chr8 (53-104)||(11359865-11359916)
[»] chr4 (8 HSPs)
chr4 (19-155)||(23839864-23840000)
chr4 (701-762)||(23847337-23847398)
chr4 (516-576)||(3557376-3557436)
chr4 (521-575)||(3565399-3565453)
chr4 (702-752)||(10571451-10571501)
chr4 (530-575)||(1686646-1686691)
chr4 (714-767)||(10467900-10467953)
chr4 (714-767)||(10482038-10482091)
[»] scaffold0649 (1 HSPs)
scaffold0649 (46-136)||(4648-4738)


Alignment Details
Target: chr6 (Bit Score: 762; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 16 - 833
Target Start/End: Complemental strand, 19747605 - 19746788
Alignment:
Q  16 tttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagt 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747605 tttcttaacgtgaaaaccatcatgcaattaaaatgtgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagt 19747506  T
Q  116 cttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttc 215  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747505 cttcacaaaatccacacatcatactcacaccaccaactttgaaatatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttc 19747406  T
Q  216 aaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaatggattgttttgcttgattttccattctctccat 315  Q
    ||  |||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19747405 aatcactgtttttggtgacaatttccatgatttgaatgacacttgtcaggttattggttcctgcaatggattgttttgcttgattttccattctctccat 19747306  T
Q  316 aggaagtatacaaaatactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactttccgatgctacaacacttcatcagaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747305 aggaagtatacaaaatactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactttccgatgctacaacacttcatcagaaa 19747206  T
Q  416 ctttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggtggcgtatcgggcagaagaagatgatgcgaaccacaacggttcatggag 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  19747205 ctttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggtggcatatcgggcagaagaagatgatgcgaaccacagcggttcatggag 19747106  T
Q  516 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcctattggatgtattcaattcaatcgaaataac 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19747105 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcctattggatgtattcaaatcaatcgaaataac 19747006  T
Q  616 aatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatttttgtgcttcttatcattacgaatgtatgaattatgttgagcaatttg 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747005 aatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatttttgtgcttcttatcattacgaatgtatgaattatgttgagcaatttg 19746906  T
Q  716 tgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttct 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19746905 tgattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtcccacactttcagccaactcttcatgttct 19746806  T
Q  816 gatggactgcctttgctt 833  Q
    ||||||||||||||||||    
T  19746805 gatggactgcctttgctt 19746788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 712 - 764
Target Start/End: Original strand, 33568839 - 33568891
Alignment:
Q  712 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 764  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  33568839 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 33568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 702 - 764
Target Start/End: Original strand, 33576015 - 33576077
Alignment:
Q  702 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 764  Q
    ||||||| ||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  33576015 tgttgagaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgct 33576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 23085897 - 23086190
Alignment:
Q  17 ttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtc 116  Q
    ||||||||  |||||| |||  || ||| |||||||| ||||||||||||||| ||||| ||   ||| | | |||| || | || || || ||||||||    
T  23085897 ttcttaacccgaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcgtctccgatccaatcttcataaagaatcatcttaagaagtc 23085996  T
Q  117 ttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgagaatccttca 216  Q
     |||||||||||||   ||||||||||||||| ||||| ||| || |||||||||| ||| || |||||| | ||||||||||||||||||||| ||||     
T  23085997 atcacaaaacccacgtctcatactcacaccactaacttcgaagtaccctatcagtaatgtcgaatccttctctgtgagtcgtttactcgagaattcttcg 23086096  T
Q  217 aatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaatggattgttttgcttgattttccattctc 310  Q
    |  | |||||  ||||||||||  ||||  ||  | || || ||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  23086097 atcattgtttccggtgacaattgccatggatcagaggacacatgtcatgttgttggttcctgcaatggattgctttgcttgcttttccattctc 23086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 833
Target Start/End: Original strand, 23086632 - 23086758
Alignment:
Q  707 agcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactct 806  Q
    |||| ||||| |||||||| |||||||| || || ||||||||||  || || ||||| ||    ||||||||||| || ||| | | ||||||| ||||    
T  23086632 agcagtttgtcattgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctct 23086731  T
Q  807 tcatgttctgatggactgcctttgctt 833  Q
    ||||||||||| |||||||||||||||    
T  23086732 tcatgttctgaaggactgcctttgctt 23086758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 23086420 - 23086473
Alignment:
Q  507 ttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaa 560  Q
    |||||||| | || |||||||||||||||||||  |||||||||||||||||||    
T  23086420 ttcatggaaatgtgaggtcagaattttcagttttggtgataattgttggagaaa 23086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 462
Target Start/End: Original strand, 23086318 - 23086360
Alignment:
Q  420 caagttcggttttggttgtgatatttcaacaggaacttacaag 462  Q
    |||||||  ||||||||||||||||||||| ||||||||||||    
T  23086318 caagttcacttttggttgtgatatttcaaccggaacttacaag 23086360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 720 - 833
Target Start/End: Complemental strand, 23999667 - 23999554
Alignment:
Q  720 tgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatg 819  Q
    |||||||||| |||||| |||  | |||||||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| | |||    
T  23999667 tgtttcccttaatcttttgaccaatacatacatgcaatttttgctacctcctagttttgatgaagtcccacactttcagccaactcttcatgttttcatg 23999568  T
Q  820 gactgcctttgctt 833  Q
    |||| |||||||||    
T  23999567 gactacctttgctt 23999554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 715 - 815
Target Start/End: Original strand, 24021626 - 24021726
Alignment:
Q  715 gtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttc 814  Q
    |||||||||||||||||||||||||| ||||||  ||  ||||||||| | || || | ||||||||| || |||   ||||||||||||||||| ||||    
T  24021626 gtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttc 24021725  T
Q  815 t 815  Q
    |    
T  24021726 t 24021726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 709 - 751
Target Start/End: Original strand, 24016641 - 24016683
Alignment:
Q  709 caatttgtgattgtttcccttgatctttcgactgagacataca 751  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  24016641 caatttgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 701 - 751
Target Start/End: Original strand, 26237458 - 26237508
Alignment:
Q  701 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 751  Q
    |||||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  26237458 atgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 701 - 751
Target Start/End: Original strand, 26256619 - 26256669
Alignment:
Q  701 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 751  Q
    |||||||||||||||||||| |||| ||||||||||| || ||||||||||    
T  26256619 atgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 26255963 - 26256016
Alignment:
Q  26 tgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatca 79  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| |||||||||    
T  26255963 tgaaaaccatcgtgctattcaaatgcgtgagcaagtcttggaacactctcatca 26256016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 15507893 - 15508005
Alignment:
Q  19 cttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtctt 118  Q
    |||||| | ||||||||| ||||| | |||||| ||||||||||||||||  |||||||   |||| | |||||| |  |||| ||||| |||||||| |    
T  15507893 cttaacataaaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatatctgatccaaccttcatcgaaaagcaccttaagaagtcgt 15507992  T
Q  119 cacaaaacccaca 131  Q
    ||||||| |||||    
T  15507993 cacaaaagccaca 15508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 26236014 - 26236124
Alignment:
Q  28 aaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacc 127  Q
    |||||| ||| || ||| ||||||||||||||||| |||||| ||||||||  |||| | ||||||||  | || || || |||||||| |||||||| |    
T  26236014 aaaaccctcacgcgattcaaatgcgtgagcaagtcctggaacactctcatctctgatccaaccttcgtcgacaaccatcttaagaagtcatcacaaaaac 26236113  T
Q  128 cacacatcata 138  Q
      |||||||||    
T  26236114 agcacatcata 26236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 702 - 833
Target Start/End: Original strand, 36339960 - 36340091
Alignment:
Q  702 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagcca 801  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||  || |||||||| ||  | |||||| | || || |||  | || |||||    
T  36339960 tgttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagcca 36340059  T
Q  802 actcttcatgttctgatggactgcctttgctt 833  Q
     ||||||  |||||||||||||||||||||||    
T  36340060 tctcttcgggttctgatggactgcctttgctt 36340091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 767
Target Start/End: Complemental strand, 25901504 - 25901439
Alignment:
Q  702 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 767  Q
    ||||||||||| |||||||||||| |||||||| || |||||| ||||||| || || ||||||||    
T  25901504 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacc 25901439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 752
Target Start/End: Complemental strand, 25915522 - 25915472
Alignment:
Q  702 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 752  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  25915522 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacac 25915472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 712 - 764
Target Start/End: Original strand, 5233 - 5285
Alignment:
Q  712 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 764  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  5233 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 717 - 833
Target Start/End: Complemental strand, 11338786 - 11338670
Alignment:
Q  717 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 816  Q
    ||||||||||||||||||||| |||||||||||||  |||||||   | || |||||| |||||||  |||||  |||||||||||||||||| |||||     
T  11338786 gattgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatgagatcccatgctttcagccaactcttcaggttctt 11338687  T
Q  817 atggactgcctttgctt 833  Q
     ||||| | ||||||||    
T  11338686 ttggaccgactttgctt 11338670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 717 - 833
Target Start/End: Complemental strand, 11345311 - 11345195
Alignment:
Q  717 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 816  Q
    ||||||||||||||| ||||| |||||||||||||  |||||||   | || | |||||||||||| ||||||  |||||||||||||||||| |||||     
T  11345311 gattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccaagctttcagccaactcttcaggttctt 11345212  T
Q  817 atggactgcctttgctt 833  Q
     ||||| | ||||||||    
T  11345211 ttggaccgactttgctt 11345195  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 585
Target Start/End: Complemental strand, 11345507 - 11345431
Alignment:
Q  509 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 585  Q
    |||||||||||| ||||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11345507 catggagaagtcgggtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11345431  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11346058 - 11345954
Alignment:
Q  12 atcatttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaag 111  Q
    |||||| |||||||||||||||||  | ||||| |||||||||||||||||||||||| ||||||||   ||| |  ||||||| ||||||||||| ||     
T  11346058 atcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaaaacaccttaaa 11345959  T
Q  112 aagtc 116  Q
    |||||    
T  11345958 aagtc 11345954  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 717 - 833
Target Start/End: Complemental strand, 11359189 - 11359073
Alignment:
Q  717 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 816  Q
    |||||| |||||||||||||| |||||| ||||||  |||||||  || || |||||||||||||| ||||||  |||| |||||||||||||| ||||     
T  11359189 gattgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcccatgcttttagccaactcttcattttctt 11359090  T
Q  817 atggactgcctttgctt 833  Q
     ||||| | ||||||||    
T  11359089 ttggaccgactttgctt 11359073  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 585
Target Start/End: Complemental strand, 11359385 - 11359309
Alignment:
Q  509 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 585  Q
    ||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| ||| ||||||||    
T  11359385 catggagaagtcaggtcagaattctcagtttgagcgatgattgttggagaaatatcgacagttttcctgtgattcct 11359309  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 585
Target Start/End: Complemental strand, 11338980 - 11338905
Alignment:
Q  510 atggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 585  Q
    |||||||||||| |||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11338980 atggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11338905  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 721 - 833
Target Start/End: Complemental strand, 11339625 - 11339513
Alignment:
Q  721 gtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatgg 820  Q
    |||||||||||||| || | ||||||||| |  |||||||   |||| |||||||||||||| || ||  ||||||||||||||||||| |||||  |||    
T  11339625 gtttcccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttgatgaggtaccctactttcagccaactcttcaggttcttttgg 11339526  T
Q  821 actgcctttgctt 833  Q
    || | ||||||||    
T  11339525 accggctttgctt 11339513  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 11359916 - 11359865
Alignment:
Q  53 tgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaaca 104  Q
    ||||||||||||||||| ||||||||  |||| |||||||||| ||||||||    
T  11359916 tgagcaagtcatggaacactctcatctctgatccgaccttcgtccaaaaaca 11359865  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 23839864 - 23840000
Alignment:
Q  19 cttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtctt 118  Q
    |||||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||||||||   ||| |  |||  ||  ||||| |||| || ||||| |    
T  23839864 cttaacgtgaaaaccatcttgcgattcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtcgt 23839963  T
Q  119 cacaaaacccacacatcatactcacaccaccaacttt 155  Q
    || | ||||||||| ||||||||| ||||||||||||    
T  23839964 caaataacccacacctcatactcaaaccaccaacttt 23840000  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 762
Target Start/End: Complemental strand, 23847398 - 23847337
Alignment:
Q  701 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttg 762  Q
    ||||||| ||| | |||||| ||||||||||||||||||| ||||||||||  |||||||||    
T  23847398 atgttgatcaactcgtgattctttcccttgatctttcgaccgagacatacatccaatttttg 23847337  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 576
Target Start/End: Original strand, 3557376 - 3557436
Alignment:
Q  516 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccct 576  Q
    |||| |||| ||| ||||||||||| ||||||||  ||||||||||||||| |||||||||    
T  3557376 aagtgaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 575
Target Start/End: Original strand, 3565399 - 3565453
Alignment:
Q  521 aggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccc 575  Q
    |||| ||| ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  3565399 aggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 3565453  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 752
Target Start/End: Complemental strand, 10571501 - 10571451
Alignment:
Q  702 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 752  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  10571501 tgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacac 10571451  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 1686691 - 1686646
Alignment:
Q  530 ttttcagtttaagtgataattgttggagaaatattgagagtttccc 575  Q
    ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  1686691 ttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 1686646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 767
Target Start/End: Original strand, 10467900 - 10467953
Alignment:
Q  714 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 767  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10467900 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10467953  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 767
Target Start/End: Original strand, 10482038 - 10482091
Alignment:
Q  714 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 767  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10482038 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10482091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 4648 - 4738
Alignment:
Q  46 aaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatca 136  Q
    ||||| |||||||| ||||||||||| ||||||   ||| | | |||||| ||||  ||||||||||| || |||||||||||||||||||    
T  4648 aaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatca 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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