View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_low_30 (Length: 403)
Name: NF21284_low_30
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_30 |
 | |
|
| [»] scaffold1453 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 30049783 - 30049387
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049783 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
30049684 |
T |
|
| Q |
118 |
gtcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataag |
194 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30049683 |
gtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataag |
30049584 |
T |
|
| Q |
195 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgctt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30049583 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgctt |
30049484 |
T |
|
| Q |
295 |
cttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049483 |
cttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
30049387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 7162735 - 7162342
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7162735 |
atgtttactatgctgcaaatttaatacaaaccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgat |
7162636 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaactt---------------------gtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagc |
195 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||| | |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
7162635 |
gtcatatgacataaacctgcttaacttgtgcagataaccttattacttgtgcagcatagttttactaacaaaataagttaaaatgattacacacataagc |
7162536 |
T |
|
| Q |
196 |
aataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
7162535 |
aataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttc |
7162436 |
T |
|
| Q |
296 |
ttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatt |
389 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7162435 |
ttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccatt |
7162342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 30045380 - 30045121
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045380 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
30045281 |
T |
|
| Q |
118 |
gtc----atatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataag |
194 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045280 |
gtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataag |
30045181 |
T |
|
| Q |
195 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045180 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
30045121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 3946037 - 3945641
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3946037 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
3945938 |
T |
|
| Q |
118 |
gtcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataag |
194 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3945937 |
gtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataag |
3945838 |
T |
|
| Q |
195 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgctt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3945837 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgctt |
3945738 |
T |
|
| Q |
295 |
cttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945737 |
cttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
3945641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 3941638 - 3941377
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941638 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
3941539 |
T |
|
| Q |
118 |
gtc----atatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataag |
194 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941538 |
gtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataag |
3941439 |
T |
|
| Q |
195 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941438 |
caataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
3941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 22365661 - 22365271
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
22365661 |
atgtttactatactgcaaatttgatacatatcatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagttgat |
22365562 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365561 |
gtcatatgacataaacctacttaacttgtgcagataaccttacttatgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaat |
22365462 |
T |
|
| Q |
199 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttctta |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
22365461 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttatctggaatactcccagcttgcttctta |
22365362 |
T |
|
| Q |
299 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22365361 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccatt |
22365271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 22361274 - 22361019
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22361274 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgat |
22361175 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361174 |
gtcatatgacataaacctacttaacttgtgcagataaccttacttgtgcagcatagctttactaacaaaacaagttaaaataattacacacataagcaat |
22361075 |
T |
|
| Q |
199 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361074 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
22361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 23397192 - 23397298
Alignment:
| Q |
45 |
ataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaactt |
144 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| || |||||||| ||||||||| | | ||| ||| | |||||||||| |||||||||||| ||||||| |
|
|
| T |
23397192 |
ataccatccatacatctttcttacatatttagagtcaaatacttagtaatgacataacttatactttgttgatgtcatacgacataaacctatttaactt |
23397291 |
T |
|
| Q |
145 |
gtgcaga |
151 |
Q |
| |
|
|| |||| |
|
|
| T |
23397292 |
gtacaga |
23397298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 23397337 - 23397404
Alignment:
| Q |
170 |
aagttaaaataattacacaca--taagcaataaagtaacataaacaataaagtattcagaaaagtttt |
235 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
23397337 |
aagttaaaatcattacacacacataggcaataaagtaacattaacaacgaaatattcagaaaagtttt |
23397404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 39949399 - 39949789
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
39949399 |
atgtttactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagcctatgtttagctgat |
39949498 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaacttg----------------tgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949499 |
gtcatatgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataa |
39949598 |
T |
|
| Q |
201 |
agtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagc |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
39949599 |
agtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagc |
39949698 |
T |
|
| Q |
301 |
tccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949699 |
tccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
39949789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 39953791 - 39954045
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||| |
|
|
| T |
39953791 |
atgtttactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagtctatgtttagctgat |
39953890 |
T |
|
| Q |
118 |
gtcatatgacataaacctactta----------------acttgtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953891 |
gtcatatgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataa |
39953990 |
T |
|
| Q |
201 |
agtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacac |
255 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39953991 |
agtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacac |
39954045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 196247 - 196628
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
196247 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgat |
196346 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaat |
198 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
196347 |
gtcatatgacgtaaacctacttaactcgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaat |
196446 |
T |
|
| Q |
199 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttctta |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
196447 |
aaagtaacataa-----------ttcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttctta |
196535 |
T |
|
| Q |
299 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196536 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatttt |
196628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 200626 - 200872
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
200626 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgat |
200725 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaat |
198 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
200726 |
gtcatatgaggtaaacctacttaacttgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaat |
200825 |
T |
|
| Q |
199 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
256 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
200826 |
aaagtaacata-----------attcagaaaagttttataggtcaattagtcaacact |
200872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 1330824 - 1330569
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||| ||||| ||| |||||| |
|
|
| T |
1330824 |
atgtttactatgctgcaaatttgatacataccatccttacatccttcttacatacttatagtcaaatacttactaatgactcaacctatactttgctgat |
1330725 |
T |
|
| Q |
118 |
gtcatatgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1330724 |
gtcatatgacataaacctacttaacttgtgcagataacattacttgtgcagtatagttttactaacaaaacaagttaaaatgattacacacataagcaat |
1330625 |
T |
|
| Q |
199 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
254 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1330624 |
agagtaacataaacaataaagtattcagacaagttttataggtcaattagtcaaca |
1330569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1453 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold1453
Description:
Target: scaffold1453; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 85 - 1
Alignment:
| Q |
18 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
85 |
atgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University