View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_32 (Length: 397)

Name: NF21284_low_32
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_32
NF21284_low_32
[»] chr1 (38 HSPs)
chr1 (20-214)||(11632222-11632417)
chr1 (215-313)||(13536946-13537044)
chr1 (337-397)||(37499088-37499148)
chr1 (214-266)||(45597623-45597675)
chr1 (210-288)||(4530188-4530265)
chr1 (215-262)||(22424796-22424843)
chr1 (336-395)||(23061350-23061409)
chr1 (217-262)||(22861876-22861921)
chr1 (213-262)||(22862601-22862650)
chr1 (214-262)||(22425522-22425570)
chr1 (336-395)||(23057049-23057108)
chr1 (350-397)||(28494116-28494163)
chr1 (333-395)||(8461523-8461585)
chr1 (335-384)||(921840-921889)
chr1 (212-292)||(13536278-13536357)
chr1 (226-325)||(38149974-38150068)
chr1 (335-395)||(39971267-39971327)
chr1 (335-395)||(51985283-51985343)
chr1 (336-395)||(6519986-6520044)
chr1 (336-395)||(18642217-18642276)
chr1 (336-395)||(35305500-35305559)
chr1 (335-382)||(50239275-50239322)
chr1 (337-395)||(51369666-51369724)
chr1 (215-265)||(51609381-51609431)
chr1 (343-397)||(52303359-52303412)
chr1 (214-251)||(51129372-51129409)
chr1 (336-388)||(5956525-5956577)
chr1 (216-256)||(37689929-37689969)
chr1 (338-381)||(26010943-26010986)
chr1 (338-381)||(51977859-51977902)
chr1 (213-251)||(4626352-4626390)
chr1 (341-395)||(45423963-45424017)
chr1 (341-395)||(45673665-45673719)
chr1 (215-251)||(4530921-4530957)
chr1 (336-388)||(23459548-23459600)
chr1 (336-388)||(39190562-39190614)
chr1 (349-381)||(42316847-42316879)
chr1 (343-395)||(46770737-46770789)
[»] chr8 (25 HSPs)
chr8 (215-324)||(5432845-5432952)
chr8 (336-397)||(34332457-34332518)
chr8 (336-397)||(39170997-39171058)
chr8 (338-397)||(23286911-23286970)
chr8 (336-397)||(28090536-28090597)
chr8 (214-262)||(45163118-45163166)
chr8 (215-262)||(511444-511491)
chr8 (335-397)||(44935244-44935306)
chr8 (336-397)||(29773790-29773851)
chr8 (336-395)||(29459983-29460042)
chr8 (333-395)||(37511437-37511499)
chr8 (334-395)||(946319-946380)
chr8 (214-262)||(8491467-8491515)
chr8 (333-395)||(15725886-15725948)
chr8 (337-382)||(17642434-17642479)
chr8 (213-249)||(35237963-35237999)
chr8 (215-262)||(788473-788520)
chr8 (215-262)||(8492443-8492490)
chr8 (337-395)||(23274971-23275030)
chr8 (214-249)||(29184189-29184224)
chr8 (358-397)||(39171103-39171142)
chr8 (214-288)||(510452-510525)
chr8 (224-262)||(45162251-45162289)
chr8 (339-380)||(43485053-43485094)
chr8 (343-395)||(14498310-14498362)
[»] chr7 (27 HSPs)
chr7 (336-397)||(41913095-41913156)
chr7 (337-390)||(27956638-27956691)
chr7 (214-262)||(37692843-37692891)
chr7 (337-397)||(42711275-42711335)
chr7 (335-397)||(40942222-40942284)
chr7 (213-262)||(36661683-36661732)
chr7 (215-262)||(28869775-28869822)
chr7 (336-397)||(21699291-21699352)
chr7 (335-395)||(30863141-30863201)
chr7 (214-262)||(40905786-40905834)
chr7 (215-262)||(19431090-19431137)
chr7 (336-395)||(28327415-28327474)
chr7 (213-248)||(29511309-29511344)
chr7 (336-382)||(30936093-30936139)
chr7 (336-381)||(18990450-18990495)
chr7 (215-247)||(28868831-28868863)
chr7 (339-395)||(45461675-45461731)
chr7 (335-382)||(34118831-34118878)
chr7 (214-249)||(34827790-34827825)
chr7 (214-249)||(38315783-38315818)
chr7 (213-251)||(37693572-37693610)
chr7 (215-249)||(43551147-43551181)
chr7 (214-243)||(34367361-34367390)
chr7 (337-382)||(44963823-44963868)
chr7 (215-252)||(45761792-45761829)
chr7 (337-382)||(45857475-45857520)
chr7 (333-381)||(43750437-43750485)
[»] chr6 (12 HSPs)
chr6 (336-397)||(17545949-17546010)
chr6 (336-397)||(2259250-2259311)
chr6 (336-397)||(6848860-6848921)
chr6 (215-262)||(6841232-6841279)
chr6 (214-262)||(6841957-6842005)
chr6 (333-388)||(1096571-1096626)
chr6 (334-395)||(4110903-4110964)
chr6 (215-251)||(1528561-1528597)
chr6 (338-381)||(15383204-15383247)
chr6 (336-395)||(32833773-32833832)
chr6 (217-251)||(1529423-1529457)
chr6 (341-395)||(13390736-13390790)
[»] chr2 (25 HSPs)
chr2 (334-397)||(34665916-34665979)
chr2 (334-397)||(5389199-5389262)
chr2 (215-262)||(6198904-6198951)
chr2 (338-397)||(1353852-1353911)
chr2 (214-262)||(17946840-17946888)
chr2 (336-395)||(4673600-4673659)
chr2 (215-262)||(5141848-5141895)
chr2 (336-395)||(37083559-37083618)
chr2 (338-397)||(38963068-38963127)
chr2 (339-397)||(11227973-11228031)
chr2 (333-395)||(11813188-11813250)
chr2 (214-252)||(38065545-38065583)
chr2 (215-288)||(6197915-6197987)
chr2 (213-249)||(1442350-1442386)
chr2 (215-247)||(5142570-5142602)
chr2 (335-395)||(14532822-14532882)
chr2 (215-262)||(30901384-30901431)
chr2 (214-249)||(30902187-30902222)
chr2 (338-381)||(37909720-37909763)
chr2 (350-388)||(15771322-15771360)
chr2 (215-243)||(2992875-2992903)
chr2 (214-262)||(6182091-6182139)
chr2 (215-251)||(17947948-17947984)
chr2 (351-395)||(33423048-33423092)
chr2 (336-376)||(34438186-34438226)
[»] chr3 (29 HSPs)
chr3 (336-397)||(44365955-44366016)
chr3 (337-397)||(11140591-11140651)
chr3 (215-320)||(53714487-53714594)
chr3 (215-286)||(50304300-50304371)
chr3 (338-395)||(42067927-42067984)
chr3 (215-288)||(44384514-44384586)
chr3 (337-395)||(29786533-29786591)
chr3 (215-292)||(11267658-11267734)
chr3 (337-395)||(38785082-38785140)
chr3 (214-251)||(50305480-50305517)
chr3 (215-259)||(10343330-10343374)
chr3 (218-250)||(31891261-31891293)
chr3 (213-249)||(44993767-44993803)
chr3 (215-262)||(23379332-23379379)
chr3 (223-262)||(31892186-31892225)
chr3 (337-388)||(37492251-37492302)
chr3 (338-397)||(44670260-44670319)
chr3 (339-382)||(52082045-52082088)
chr3 (335-381)||(4663144-4663190)
chr3 (337-395)||(29347311-29347369)
chr3 (337-395)||(39629948-39630006)
chr3 (341-395)||(47948396-47948450)
chr3 (213-262)||(32355862-32355911)
chr3 (343-388)||(35171197-35171242)
chr3 (213-262)||(44992861-44992910)
chr3 (336-388)||(876221-876273)
chr3 (215-251)||(1127364-1127400)
chr3 (337-381)||(19547851-19547895)
chr3 (338-382)||(53516583-53516627)
[»] chr4 (28 HSPs)
chr4 (334-397)||(55722823-55722886)
chr4 (336-397)||(48578906-48578967)
chr4 (337-397)||(28038031-28038091)
chr4 (213-262)||(49346104-49346153)
chr4 (336-388)||(11109595-11109647)
chr4 (214-262)||(50708991-50709039)
chr4 (215-262)||(32893604-32893651)
chr4 (338-397)||(41759660-41759719)
chr4 (212-251)||(49708737-49708776)
chr4 (336-395)||(51435811-51435870)
chr4 (339-397)||(53388848-53388906)
chr4 (215-255)||(49708019-49708059)
chr4 (214-262)||(55879793-55879841)
chr4 (215-262)||(34956284-34956331)
chr4 (341-395)||(33075983-33076037)
chr4 (217-262)||(17088719-17088764)
chr4 (217-262)||(17096694-17096739)
chr4 (333-390)||(38836203-38836260)
chr4 (339-395)||(30343176-30343232)
chr4 (339-382)||(31908803-31908846)
chr4 (215-262)||(37142713-37142760)
chr4 (337-388)||(47302335-47302386)
chr4 (214-252)||(5826243-5826281)
chr4 (341-395)||(34280228-34280282)
chr4 (338-382)||(9858610-9858654)
chr4 (215-243)||(17979134-17979162)
chr4 (335-395)||(52592141-52592201)
chr4 (337-381)||(53695386-53695430)
[»] scaffold0077 (2 HSPs)
scaffold0077 (336-397)||(48355-48416)
scaffold0077 (336-384)||(58123-58171)
[»] chr5 (20 HSPs)
chr5 (214-262)||(6353683-6353731)
chr5 (337-397)||(42917464-42917524)
chr5 (215-262)||(19855062-19855109)
chr5 (337-395)||(13410890-13410948)
chr5 (215-262)||(19854336-19854383)
chr5 (336-395)||(24098218-24098277)
chr5 (336-395)||(43237354-43237413)
chr5 (333-395)||(3056744-3056806)
chr5 (337-387)||(32467399-32467449)
chr5 (214-251)||(6354697-6354734)
chr5 (333-382)||(13091274-13091323)
chr5 (335-395)||(36338843-36338903)
chr5 (216-251)||(18669867-18669902)
chr5 (333-395)||(18228456-18228518)
chr5 (213-243)||(39949490-39949520)
chr5 (215-248)||(41785497-41785530)
chr5 (335-395)||(2141590-2141650)
chr5 (336-380)||(12362356-12362400)
chr5 (214-262)||(39950334-39950382)
chr5 (215-243)||(41784622-41784650)
[»] scaffold0283 (1 HSPs)
scaffold0283 (335-397)||(6584-6646)
[»] scaffold0041 (1 HSPs)
scaffold0041 (214-262)||(44184-44232)
[»] scaffold0625 (1 HSPs)
scaffold0625 (336-381)||(6265-6310)
[»] scaffold1052 (1 HSPs)
scaffold1052 (212-261)||(1568-1617)
[»] scaffold0070 (1 HSPs)
scaffold0070 (215-251)||(2719-2755)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 11632222 - 11632417
Alignment:
Q  20 acttacacaaatttattttccctaacaatttttcttgataccttgagttttgctagatgatcctatcatttgttcttctcaaattctcaagttgaaatca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  11632222 acttacacaaatttattttccctaacaatttttcttgataccttgagttttgctagatgatctgatcatttgttcttctcaaattctcaagttgaaatca 11632321  T
Q  120 taga---tttattttcgttcgactttttctgcttttgtattgttgtcaaactaagtttgtaacaccttaaatgctacaatatataatatttaaagata 214  Q
    ||||   |||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||  |||||  ||||||||||||||||||    
T  11632322 tagagagtttattttcgctcgactttttctacttttgtattgttgtcaaactaagtctataacaccttaaaccctaca--atataatatttaaagata 11632417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 13537044 - 13536946
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaataaagaccgataatatcatagtctctc 313  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||  ||| || ||||| |||||| |||||||| || ||| ||||||||||    
T  13537044 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatattttttaagcattagatcaaagaaagaccggtattatgatagtctctc 13536946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 37499148 - 37499088
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  37499148 gggaacttctatggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 37499088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 45597623 - 45597675
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatac 266  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45597623 aggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatac 45597675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 4530188 - 4530265
Alignment:
Q  210 agataggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaata 288  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||| || |||||    
T  4530188 agattggtggcatttagggtgggtgagggaaagaatttcccatcatagaaaag-tagcttttaaccattagattaaata 4530265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 22424796 - 22424843
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  22424796 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 22424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 23061409 - 23061350
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||||| ||||    
T  23061409 agggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacaatttt 23061350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 22861876 - 22861921
Alignment:
Q  217 tggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  22861876 tggcatttagggtgggtgagggaaagaattccccatcataggaaag 22861921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 22862650 - 22862601
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  22862650 taggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 22862601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 22425570 - 22425522
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  22425570 aggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 22425522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 23057108 - 23057049
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  |||||||||||||||||||| ||||||| |||||||||||| ||||    
T  23057108 agggaacttctacggtacacccgcaaattaaggtgtaccggtcctctcgcttacaatttt 23057049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 28494163 - 28494116
Alignment:
Q  350 gtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  28494163 gtacacccgcaaattaaggtgtaccggtactcttgcttacatttttat 28494116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 8461523 - 8461585
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||| ||||||||||| |||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  8461523 attaaggaacttctatggtacacccgcaaattacggtgtaccggtactctcacttacaatttt 8461585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 921840 - 921889
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcg 384  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  921840 tagggaacttctatggtacacctgcaaattaaggtgtaccggtactctcg 921889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 13536278 - 13536357
Alignment:
Q  212 ataggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaataaaga 292  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||  ||| ||| |||||||  ||||||||    
T  13536278 ataggtggcatttagggtgggtgagggaaagagtttcctatcat-ggaaaaataaattttaactattaaattgaataaaga 13536357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 38149974 - 38150068
Alignment:
Q  226 gggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaataaagacc--gataatatcatagtctctccacattagat 323  Q
    |||||||||||||||||||||||||       ||||||||| |||||| ||||| ||||||||| |||   ||||||||||||||||||| |||||| ||    
T  38149974 gggtgggtgagggaaagaatttccc-------gaaagatacttttaaatcattagatcaaataatgactatgataatatcatagtctctcaacattaaat 38150066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 39971267 - 39971327
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||| |||||||| ||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  39971267 taggggacttctatggtacacccgtaaattacggtgtaccggtactctcgcttacaatttt 39971327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 51985343 - 51985283
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||||  ||||||| |||||||| ||| |||||||||||||||||||| ||||    
T  51985343 tagggaacttctacggtacacctgcaaattacggtgtaccggtactctcgcttacaatttt 51985283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 6519986 - 6520044
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  6519986 agggaacttctacggtacacc-gcaaattaaggtgtaccggtactctcgcttacaatttt 6520044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 18642276 - 18642217
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||| |||||||| ||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  18642276 aggggacttctatggtacacccgtaaattacggtgtaccggtactctcgcttacaatttt 18642217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 35305559 - 35305500
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  |||||| || |||||||||| |||||||||||||||||||| ||||    
T  35305559 agggaacttctacggtacactcgtaaattaaggtgtaccggtactctcgcttacaatttt 35305500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 382
Target Start/End: Original strand, 50239275 - 50239322
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||    
T  50239275 tagggaacttctacggtacacccgcaaattaaggtgtaccggtactct 50239322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 51369724 - 51369666
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||  ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  51369724 gggaacttttacggtacacctgcaaattaaggtgtaccggtactctcgcttacaatttt 51369666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 51609381 - 51609431
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagata 265  Q
    ||||||||||||||||||||||||||||| |||| || ||| |||||||||    
T  51609381 ggtggcatttagggtgggtgagggaaagagtttctcaacatgggaaagata 51609431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 52303412 - 52303359
Alignment:
Q  343 ttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||| |||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  52303412 ttctaaagtacacc-gcaaattaaggtgtaccggtactctcacttacatttttat 52303359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 51129372 - 51129409
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    |||||||||||||||||||||||||||||| |||||||    
T  51129372 aggtggcatttagggtgggtgagggaaagagtttccca 51129409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 5956525 - 5956577
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    ||||||||||||  |||||||| ||||||||| | ||||||||||||||||||    
T  5956525 agggaacttctacggtacacccacaaattaagctgtaccggtactctcgctta 5956577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 37689969 - 37689929
Alignment:
Q  216 gtggcatttagggtgggtgagggaaagaatttcccatcata 256  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  37689969 gtggcatttagggtgggtaagggaaagagtttcccatcata 37689929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 26010943 - 26010986
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||  |||||||||||||||||||| |||||||||||    
T  26010943 ggaacttctacggtacacccgcaaattaaggtgtaccggtactc 26010986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 51977859 - 51977902
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||  |||||||||||||||||||| |||||||||||    
T  51977859 ggaacttctacggtacacccgcaaattaaggtgtaccggtactc 51977902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 4626390 - 4626352
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  4626390 taggtggcatttagggtgggagagggaaaaaatttccca 4626352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 45424017 - 45423963
Alignment:
Q  341 acttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||||||||| |||||| | | |||||||||||||||||||| ||||    
T  45424017 acttctatggtacacccgtaaattacgatgtaccggtactctcgcttacaatttt 45423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 45673719 - 45673665
Alignment:
Q  341 acttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||| ||||    
T  45673719 acttctatggtacatccgtaaattacggtgtaccggtactctcgcttacaatttt 45673665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 4530957 - 4530921
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattcccca 4530921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 23459548 - 23459600
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    |||| |||||||| ||||||||| |||||| ||| |||| |||||||||||||    
T  23459548 aggggacttctatggtacacccgtaaattacggtgtaccagtactctcgctta 23459600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 39190562 - 39190614
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    |||| |||||||| ||||||| | |||||| ||| ||||||||||||||||||    
T  39190562 aggggacttctatggtacaccagtaaattacggtgtaccggtactctcgctta 39190614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 42316847 - 42316879
Alignment:
Q  349 agtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||||||||||||| |||||||||||    
T  42316847 agtacacccgcaaattaaggtgtaccggtactc 42316879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 46770737 - 46770789
Alignment:
Q  343 ttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||| ||||||||| |||||| ||| ||||||||||||| |||||| ||||    
T  46770737 ttctatggtacacccgtaaattacggtctaccggtactctcacttacaatttt 46770789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 5432845 - 5432952
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaataaagac--cgataatatcatagtctct 312  Q
    |||||||||||||||||||||||||||||||||| ||||    ||||||||| |||||||||||| |||||||||||||   | ||||||||||||||||    
T  5432845 ggtggcatttagggtgggtgagggaaagaatttctcatc----gaaagatacttttaaaccattagatcaaataaagactatggtaatatcatagtctct 5432940  T
Q  313 ccacattagatt 324  Q
    | ||||||||||    
T  5432941 caacattagatt 5432952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 34332518 - 34332457
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  34332518 agggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 34332457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 39170997 - 39171058
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  39170997 agggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 39171058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 23286970 - 23286911
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  23286970 ggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 23286911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 28090597 - 28090536
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28090597 agggaacttctacggtacacccgcaatttaaggtgtaccggtactctcgcttacatttttat 28090536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 45163166 - 45163118
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45163166 aggtggcatttagggtgggtgagggaaagattttcccatcataggaaag 45163118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 511491 - 511444
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaag 511444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 44935306 - 44935244
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  44935306 tagggaacttctacggtacacccgcaatttaaggtgtaccggtactctcggttacatttttat 44935244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 29773851 - 29773790
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  29773851 agggaacttctacggtacacccgcaatttaaggtgtaccggtactttcgcttacatttttat 29773790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 29460042 - 29459983
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  29460042 agggaacttctacggtacacctgcaaattaaggtgtaccggtactctcgcttacaatttt 29459983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 37511499 - 37511437
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||||||  ||||| ||| |||||||||| |||||||||||||||||||| ||||    
T  37511499 attagggaacttctacggtacatccgtaaattaaggtgtaccggtactctcgcttacaatttt 37511437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 946380 - 946319
Alignment:
Q  334 ttagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||||  |||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  946380 ttagggaacttctacggtacacccgcaaattacggtgtaccggtactctcacttacaatttt 946319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 8491467 - 8491515
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||    
T  8491467 aggtggcatttagggtgggtgagggaaagattttcccactataggaaag 8491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 15725886 - 15725948
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||||||  ||||||| |||||||| ||| ||||| |||||||||||||| ||||    
T  15725886 attagggaacttctacggtacacctgcaaattacggtgtaccgatactctcgcttacaatttt 15725948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 17642479 - 17642434
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||    
T  17642479 gggaacttctacggtacacccgcaaattaaggtgtaccggtactct 17642434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 35237963 - 35237999
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    ||||||||||||||||||||||||||||||| |||||    
T  35237963 taggtggcatttagggtgggtgagggaaagagtttcc 35237999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 788520 - 788473
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||| |||||||||||||||||||||||| |||||||| || ||||||    
T  788520 ggtgacatttagggtgggtgagggaaagagtttcccatgatgggaaag 788473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 8492490 - 8492443
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||    
T  8492490 ggtggcatttaggatgggtgagggaaagattttcccatcctagaaaag 8492443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 23275030 - 23274971
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttacc-ggtactctcgcttacattttt 395  Q
    |||||||||||   ||||||||||||||||||| |||| |||||||||||||||| ||||    
T  23275030 gggaacttctacgatacacccgcaaattaaggtgtaccgggtactctcgcttacaatttt 23274971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 29184189 - 29184224
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    |||||||||||||||||||||||||||||| |||||    
T  29184189 aggtggcatttagggtgggtgagggaaagagtttcc 29184224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 397
Target Start/End: Original strand, 39171103 - 39171142
Alignment:
Q  358 gcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  39171103 gcaaattaaggtgtaccagtactctcgcttacatttttat 39171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 510452 - 510525
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaata 288  Q
    ||||||||||||| |||||| |||||||||||| ||||| || |||||| ||  ||| ||||||||||| |||||    
T  510452 aggtggcatttagagtgggtaagggaaagaattccccattatgggaaag-tagtttttaaccattaaattaaata 510525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 45162251 - 45162289
Alignment:
Q  224 tagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  45162251 tagggtgggtgagggaaagaatttccctccataggaaag 45162289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 43485053 - 43485094
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtact 380  Q
    |||||||||  |||||||||||||||||||| ||||||||||    
T  43485053 gaacttctacggtacacccgcaaattaaggtgtaccggtact 43485094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 14498310 - 14498362
Alignment:
Q  343 ttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||| ||||||||| |||||| ||| ||||||||||||| |||||| ||||    
T  14498310 ttctatggtacacccgtaaattacggtctaccggtactctcacttacaatttt 14498362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 41913095 - 41913156
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  41913095 agggaacttctatggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 41913156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 27956691 - 27956638
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttaca 390  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  27956691 gggaacttctatggtacacccgcaaattaaggtgtaccggtactctcgcttaca 27956638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 37692843 - 37692891
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37692843 aggtggcatttagggtgggtgagggaaagaatttcccatcatagaaaag 37692891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 42711335 - 42711275
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||  ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  42711335 gggaacttctacggtacatccgcaaattaaggtgtaccggtactctcgcttacatttttat 42711275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 40942284 - 40942222
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||||| ||||| ||| |||||||| | |||||||||||||||||||||||||||    
T  40942284 tagggaacttctatggtacatccgtaaattaagatgtaccggtactctcgcttacatttttat 40942222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 36661683 - 36661732
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  36661683 taggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 36661732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 28869822 - 28869775
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  28869822 ggtggcatttagggtgggtgatggaaagattttcccatcataggaaag 28869775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 21699291 - 21699352
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||| |||||| |||||| ||||||||||||| ||||| |||||||| ||||||||||||    
T  21699291 agggaatttctatggtacactcgcaaattaaggtgtaccgatactctcgtttacatttttat 21699352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 30863201 - 30863141
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||| |||||||| ||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  30863201 taggggacttctattgtacacccgtaaattacggtgtaccggtactctcgcttacaatttt 30863141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 40905834 - 40905786
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  40905834 aggtggcatttagggtgggtgaggcaaagagtttcccattataggaaag 40905786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 19431090 - 19431137
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  19431090 ggtggcatttagggtgggtgagggaaagagtttcccatgatgggaaag 19431137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 28327474 - 28327415
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  |||||||||||||||||| | ||||||| |||||||||||| ||||    
T  28327474 agggaacttctacggtacacccgcaaattaagctgtaccggtcctctcgcttacaatttt 28327415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 29511309 - 29511344
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttc 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  29511309 taggtggcatttagggtgggtgagggaaagaatttc 29511344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 30936093 - 30936139
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||    
T  30936093 agggaacttctacggtacacccgcaaattaaggtgtaccggtactct 30936139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 18990495 - 18990450
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||    
T  18990495 agggaacttctacggtacacccgcaaattaaggtgtaccggtactc 18990450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 28868831 - 28868863
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaattt 247  Q
    |||||||||||||||||||||||||||||||||    
T  28868831 ggtggcatttagggtgggtgagggaaagaattt 28868863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 45461731 - 45461675
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||  ||||||| |||||||| ||| |||||||||||||||||||| ||||    
T  45461731 gaacttctacggtacacctgcaaattacggtgtaccggtactctcgcttacaatttt 45461675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 34118878 - 34118831
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||||||  |||||||||||||||||||| ||| ||||||||    
T  34118878 tagggaacttctacggtacacccgcaaattaaggtgtactggtactct 34118831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 34827825 - 34827790
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    |||||||||||||||||||||||||||||| |||||    
T  34827825 aggtggcatttagggtgggtgagggaaagagtttcc 34827790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 38315783 - 38315818
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    |||||||||||||||||||||||||||||| |||||    
T  38315783 aggtggcatttagggtgggtgagggaaagagtttcc 38315818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 37693610 - 37693572
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  37693610 taggtggtatttagggtgggtgagggaaagaattcccca 37693572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 43551147 - 43551181
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    ||||||||||||||||||||||||||||| |||||    
T  43551147 ggtggcatttagggtgggtgagggaaagagtttcc 43551181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 34367361 - 34367390
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaaga 243  Q
    ||||||||||||||||||||||||||||||    
T  34367361 aggtggcatttagggtgggtgagggaaaga 34367390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 44963823 - 44963868
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  44963823 gggaacttctatggtacacccacaatttaaggtgtaccggtactct 44963868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 45761792 - 45761829
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccat 252  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  45761792 ggtggcatttagggtgggtgaaggaaagaattccccat 45761829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 45857475 - 45857520
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||| ||  |||||||||||||||||||| ||||||||||||    
T  45857475 gggaacttttacggtacacccgcaaattaaggtgtaccggtactct 45857520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 43750485 - 43750437
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    |||||||||||||||  | ||||| |||||||||||| |||||||||||    
T  43750485 attagggaacttctacgggacacctgcaaattaaggtgtaccggtactc 43750437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 17546010 - 17545949
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  17546010 agggaacttctatagtacacccgcaaattaaggtgtactggtactctcgcttacatttttat 17545949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 2259311 - 2259250
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  2259311 agggaacttctacggtacacccgcaaattaaggtgtacaggtactctcgcttacatttttat 2259250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 6848921 - 6848860
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  6848921 agggaacttctacggtacacccgtaaattaaggtgtaccggtactctcgcttacatttttat 6848860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 6841232 - 6841279
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  6841232 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 6841279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 6842005 - 6841957
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  6842005 aggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 6841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 1096626 - 1096571
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    ||||||| |||||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  1096626 attaggggacttctatggtacacccgtaaattacggtgtaccggtactctcgctta 1096571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 4110964 - 4110903
Alignment:
Q  334 ttagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||| |||||||| ||||||||| |||||| ||| ||||||| |||||||||||| ||||    
T  4110964 ttaggggacttctatggtacacccgtaaattacggtgtaccggttctctcgcttacaatttt 4110903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 1528561 - 1528597
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttccca 1528597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 15383204 - 15383247
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||  |||||||||||||||||||| |||||||||||    
T  15383204 ggaacttctacggtacacccgcaaattaaggtgtaccggtactc 15383247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 32833773 - 32833832
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  ||||| |||||||||| ||| ||| |||||||||||||||| ||||    
T  32833773 agggaacttctacggtacatccgcaaattacggtgtactggtactctcgcttacaatttt 32833832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 1529457 - 1529423
Alignment:
Q  217 tggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||||||||||||||||||||||| |||||||    
T  1529457 tggcatttagggtgggtgagggaaagagtttccca 1529423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 13390790 - 13390736
Alignment:
Q  341 acttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||||||| | |||||| ||| |||||||||||||||||||| ||||    
T  13390790 acttctatggtacacctgtaaattacggtgtaccggtactctcgcttacaatttt 13390736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 34665979 - 34665916
Alignment:
Q  334 ttagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  34665979 ttagggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 34665916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 5389199 - 5389262
Alignment:
Q  334 ttagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  5389199 ttagggaacttctacggtacacccgcaaattaaggtgtaccggcactctcgcttacatttttat 5389262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 6198951 - 6198904
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 6198904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 1353911 - 1353852
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||  |||||||||||||||||||| |||| ||||||||||||||||||||||    
T  1353911 ggaacttctacggtacacccgcaaattaaggtgtaccagtactctcgcttacatttttat 1353852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 17946840 - 17946888
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  17946840 aggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 17946888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 4673600 - 4673659
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  4673600 agggaacttctaaggtacacctgcaaattaaggtgtaccggtactctcgcttacaatttt 4673659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 5141848 - 5141895
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  5141848 ggtggcatttagggtgggtgagggaaagaattccccatcatgggaaag 5141895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 37083618 - 37083559
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||  ||||| |||||||||||||| || ||||||||||||||||| ||||    
T  37083618 agggaacttctacggtacatccgcaaattaaggtgtatcggtactctcgcttacaatttt 37083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 38963068 - 38963127
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||   |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  38963068 ggaacttctacgttacacctgcaaattaaggtgcaccggtactctcgcttacatttttat 38963127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 11228031 - 11227973
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||  ||||||| |||||||||||| || | ||||||||||||||||||||||    
T  11228031 gaacttctacggtacacctgcaaattaaggtgtatcagtactctcgcttacatttttat 11227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 11813188 - 11813250
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||| || |||||  |||||||| ||||||||||| |||||||||||||||||||| ||||    
T  11813188 attaggcaatttctacggtacacccacaaattaaggtgtaccggtactctcgcttacaatttt 11813250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 38065545 - 38065583
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccat 252  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  38065545 aggtggcatttagggtgggtgagggaaagagtttcccat 38065583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 6197915 - 6197987
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaata 288  Q
    ||||||||||||||||||| |||||||||||| ||||| || |||||| ||  ||| ||||||||||| |||||    
T  6197915 ggtggcatttagggtgggtaagggaaagaattccccattatgggaaag-tagtttttaaccattaaattaaata 6197987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 1442350 - 1442386
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1442350 taggtggcatttagggtgggtgagggaaagagtttcc 1442386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 5142602 - 5142570
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaattt 247  Q
    |||||||||||||||||||||||||||||||||    
T  5142602 ggtggcatttagggtgggtgagggaaagaattt 5142570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 14532822 - 14532882
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||||  |||||||||||||||| ||| || || |||||||||||||| ||||    
T  14532822 tagggaacttctacggtacacccgcaaattacggtgtatcgatactctcgcttacaatttt 14532882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 30901384 - 30901431
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||| |||| ||||| | ||||||||||    
T  30901384 ggtggcatttagggtgggtgagggcaagagtttcctaccataggaaag 30901431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 30902222 - 30902187
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    |||||||||||||||||||||||||||||| |||||    
T  30902222 aggtggcatttagggtgggtgagggaaagagtttcc 30902187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 37909763 - 37909720
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||  |||||||||||||||||||| |||||||||||    
T  37909763 ggaacttctacggtacacccgcaaattaaggtgtaccggtactc 37909720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 15771322 - 15771360
Alignment:
Q  350 gtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  15771322 gtacacccgtaaattaaggtgtaccggtactctcgctta 15771360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 2992903 - 2992875
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaaga 243  Q
    |||||||||||||||||||||||||||||    
T  2992903 ggtggcatttagggtgggtgagggaaaga 2992875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 6182091 - 6182139
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||| |||||||||||||| ||||||||| ||| ||| ||||||||||    
T  6182091 aggtgacatttagggtgggtaagggaaagatttttccaccataggaaag 6182139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 17947984 - 17947948
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  17947984 ggtggcatttaggatgggtgagggaaagagtttccca 17947948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 33423048 - 33423092
Alignment:
Q  351 tacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||| |||||||||| ||| |||||||||||||||||||| ||||    
T  33423048 tacatccgcaaattacggtgtaccggtactctcgcttacaatttt 33423092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 34438186 - 34438226
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccgg 376  Q
    ||||||||||||| ||||||||| |||||||||| ||||||    
T  34438186 agggaacttctatggtacacccgtaaattaaggtgtaccgg 34438226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 44366016 - 44365955
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  44366016 agggaacttctatggtacacccgtaaattaaggtgtaccggtactctcgcttacatttttat 44365955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 11140651 - 11140591
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11140651 gggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 11140591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 53714487 - 53714594
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaataaagacc--gataatatcatagtctct 312  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||  ||  |||||| |||||||    || |||||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 53714586  T
Q  313 ccacatta 320  Q
    | ||||||    
T  53714587 caacatta 53714594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 50304300 - 50304371
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaa 286  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||  ||| |||||||| ||||||    
T  50304300 ggtggcatttagggtgggtgagggaaataatttcccaccatagaaaagatattttttaaccattagatcaaa 50304371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 42067984 - 42067927
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||||| ||||    
T  42067984 ggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgcttacaatttt 42067927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 44384514 - 44384586
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaata 288  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| || |||| |||||||| || |||||    
T  44384514 ggtggcatttagggtgggtgaggaaaagaatttcccatcatagaaaag-tagcttttaaccattagattaaata 44384586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 29786533 - 29786591
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  29786533 gggaacttctacggtacacctgcaaattaaggtgtaccggtactctcgcttacaatttt 29786591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 11267734 - 11267658
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagatacctttaaaccattaaatcaaataaaga 292  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||| |||  ||| |||||||| || |||||||||    
T  11267734 ggtggcatttagggtgggtgagggaaagaatttcctaccatgggaaa-ataaattttaaccattagattaaataaaga 11267658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 38785082 - 38785140
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||  ||||||| |||||||| ||| |||||||||||||||||||| ||||    
T  38785082 gggaacttctacggtacacctgcaaattacggtgtaccggtactctcgcttacaatttt 38785140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 50305517 - 50305480
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50305517 aggtggcatttagggtgggtgaggaaaagaatttccca 50305480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 10343330 - 10343374
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcatagga 259  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||    
T  10343330 ggtggcatttagggtgggtgagggaaagatttttccaccatagga 10343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 31891261 - 31891293
Alignment:
Q  218 ggcatttagggtgggtgagggaaagaatttccc 250  Q
    |||||||||||||||||||||||||||||||||    
T  31891261 ggcatttagggtgggtgagggaaagaatttccc 31891293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 44993803 - 44993767
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcc 249  Q
    ||||||||||||||||||||||||||||||| |||||    
T  44993803 taggtggcatttagggtgggtgagggaaagagtttcc 44993767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 23379332 - 23379379
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||| ||||||||| |||||||  |||||||||    
T  23379332 ggtggcatttagggtgggtaagggaaagattttcccactataggaaag 23379379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 31892225 - 31892186
Alignment:
Q  223 ttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  31892225 ttagagtgggtgagggaaagattttcccatcataggaaag 31892186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 37492302 - 37492251
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    |||||||||||  ||||| |||||||||| ||| ||||||||||||||||||    
T  37492302 gggaacttctacggtacatccgcaaattacggtgtaccggtactctcgctta 37492251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 44670260 - 44670319
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||  ||||| ||| |||||||||| | |||||||| ||||||||||||||||    
T  44670260 ggaacttctacggtacatccgtaaattaaggtgtgccggtactttcgcttacatttttat 44670319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 52082045 - 52082088
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||  |||||||||||||||||||| ||||||||||||    
T  52082045 gaacttctacggtacacccgcaaattaaggtgtaccggtactct 52082088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 4663144 - 4663190
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    |||||||||||||  ||||| |||||||||||||| |||||||||||    
T  4663144 tagggaacttctacggtacatccgcaaattaaggtgtaccggtactc 4663190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 29347311 - 29347369
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||  |||||||||||||||   || |||||||||||||||||||| ||||    
T  29347311 gggaacttctacggtacacccgcaaattgcagtgtaccggtactctcgcttacaatttt 29347369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 39629948 - 39630006
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||  ||||| |||||||||||| | |||||||||| ||||||||| ||||    
T  39629948 gggaacttctacggtacatccgcaaattaagatgtaccggtactatcgcttacaatttt 39630006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 47948396 - 47948450
Alignment:
Q  341 acttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||||||||| |||| | ||| |||||||||||||||||||| ||||    
T  47948396 acttctatggtacacccgtaaatgacggtgtaccggtactctcgcttacaatttt 47948450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 32355862 - 32355911
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||| |||||||||||||| ||||||||| ||| ||| ||||||||||    
T  32355862 taggtgacatttagggtgggtaagggaaagatttttccaccataggaaag 32355911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 35171197 - 35171242
Alignment:
Q  343 ttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    |||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  35171197 ttctatggtacacccgtaaattacggtgtaccggtactctcgctta 35171242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 44992861 - 44992910
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||| |||||| |||| ||||| | ||||||||||    
T  44992861 taggtggcatttagggtggttgagggcaagagtttcctaccataggaaag 44992910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 876221 - 876273
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    ||||||||||||  |||||||||||||||| | | ||| ||||||||||||||    
T  876221 agggaacttctacggtacacccgcaaattacgatgtactggtactctcgctta 876273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 1127364 - 1127400
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||||||||||||||||||||||| | |||||||    
T  1127364 ggtggcatttagggtgggtgagggaaaaagtttccca 1127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 19547895 - 19547851
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    |||||||||||  |||||||| ||||||||||| |||||||||||    
T  19547895 gggaacttctacggtacacccacaaattaaggtgtaccggtactc 19547851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 53516583 - 53516627
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||| |||||| ||||||| |||||||||||| ||||||||||||    
T  53516583 ggaatttctatggtacacctgcaaattaaggtgtaccggtactct 53516627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 55722886 - 55722823
Alignment:
Q  334 ttagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  55722886 ttagggaacttttacggtacacccgcaaattaaggtgtaccggtactctcgcttacatttttat 55722823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 48578906 - 48578967
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  48578906 agggaacttctacggtacacccgtaaattaaggtgtaccggtactctcgcttacatttttat 48578967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 28038091 - 28038031
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  28038091 gggaacttctacggtacacccacaaattaaggtgtaccggtactctcgcttacatttttat 28038031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 49346104 - 49346153
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  49346104 taggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 49346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 11109595 - 11109647
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  11109595 agggaacttctacggtacacccgcaaattaaggtgtaccggtactctcgctta 11109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 50708991 - 50709039
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  50708991 aggtggcatttagggtgggtgaggcaaagaatttcccattataggaaag 50709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 32893604 - 32893651
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32893604 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 32893651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 41759660 - 41759719
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||  ||||||||| ||||||| || |||||||||||||||||||||||||||    
T  41759660 ggaacttctacggtacacccgtaaattaaagtgtaccggtactctcgcttacatttttat 41759719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 49708776 - 49708737
Alignment:
Q  212 ataggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49708776 ataggtggcatttagggtgggtgagggaaagaatttccca 49708737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 51435811 - 51435870
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||  ||||||||||    
T  51435811 agggaacttctatggtacacccgcaaattaaggtgtaccggaactctcatttacattttt 51435870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 53388848 - 53388906
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||| ||||| | |||||||||||| |||||||||||||| ||||||||||||    
T  53388848 gaacttctatggtacatctgcaaattaaggtgtaccggtactctcgtttacatttttat 53388906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 49708019 - 49708059
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcat 255  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  49708019 ggtggcatttagggtgggtgagggaaagaattccccatcat 49708059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 55879793 - 55879841
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaag 55879841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 34956284 - 34956331
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  34956284 ggtggcatttagggtgggtgaggcaaagagtttcccattataggaaag 34956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 33075983 - 33076037
Alignment:
Q  341 acttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  33075983 acttctatggtacacccgtaaattacggtgtaccggtactctcgcttacaatttt 33076037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 17088764 - 17088719
Alignment:
Q  217 tggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||    
T  17088764 tggcatttagggtgggtgagggaaagaattctccaccataggaaag 17088719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 17096739 - 17096694
Alignment:
Q  217 tggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||    
T  17096739 tggcatttagggtgggtgagggaaagaattctccaccataggaaag 17096694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 38836260 - 38836203
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttaca 390  Q
    |||||||||||||||  ||||||| |||||||| ||| || |||||||||||||||||    
T  38836260 attagggaacttctacggtacacctgcaaattacggtgtatcggtactctcgcttaca 38836203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 30343232 - 30343176
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||  |||||||||||||||| ||||||||| ||||||| |||||| ||||    
T  30343232 gaacttctacggtacacccgcaaattacggtttaccgctactctcacttacaatttt 30343176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 31908846 - 31908803
Alignment:
Q  339 gaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||  |||||||||||||||||||| ||||||||||||    
T  31908846 gaacttctacggtacacccgcaaattaaggtgtaccggtactct 31908803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 37142760 - 37142713
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||| |||||||| ||||||| ||| ||||||    
T  37142760 ggtggcatttagggtgggtgggggaaagagtttcccaacatgggaaag 37142713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 47302386 - 47302335
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctta 388  Q
    |||||||||||  ||||||||| |||||| ||| ||||||||||||||||||    
T  47302386 gggaacttctacggtacacccgtaaattacggtgtaccggtactctcgctta 47302335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 5826281 - 5826243
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccat 252  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  5826281 aggtgacatttagggtgggtgagggaaagagtttcccat 5826243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 34280228 - 34280282
Alignment:
Q  341 acttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||| ||||||||| |||||  ||| |||||||||||||||||||| ||||    
T  34280228 acttctatggtacacccgtaaattgcggtgtaccggtactctcgcttacaatttt 34280282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 9858654 - 9858610
Alignment:
Q  338 ggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    ||||||||||  ||||||| |||||||||||| ||||||||||||    
T  9858654 ggaacttctacggtacacctgcaaattaaggtgtaccggtactct 9858610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 17979162 - 17979134
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaaga 243  Q
    |||||||||||||||||||||||||||||    
T  17979162 ggtggcatttagggtgggtgagggaaaga 17979134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 52592201 - 52592141
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||||  ||||| ||| |||||| ||| ||||||||||||||| |||| ||||    
T  52592201 tagggaacttctacggtacatccgtaaattacggtgtaccggtactctcgcatacaatttt 52592141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 53695386 - 53695430
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    |||||||||||  ||||||| |||||||||||| |||||||||||    
T  53695386 gggaacttctacggtacacctgcaaattaaggtgtaccggtactc 53695430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 48416 - 48355
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    ||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  48416 agggaacttctacggtacacccgcaatttaaggtgtaccggtactctcgcttacatttttat 48355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 58171 - 58123
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcg 384  Q
    ||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  58171 agggaacttctacggtacacccgcaatttaaggtgtaccggtactctcg 58123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 6353683 - 6353731
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6353683 aggtggcatttagggtgggtgagggaaagattttcccatcataggaaag 6353731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 42917524 - 42917464
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  42917524 gggaacttttatggtacacccacaaattaaggtgtaccggtactctcgcttacatttttat 42917464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 19855109 - 19855062
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  19855109 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 19855062  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 13410948 - 13410890
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||  ||||| |||||||||||||| |||||||||||||||||||| ||||    
T  13410948 gggaacttctacggtacatccgcaaattaaggtgtaccggtactctcgcttacaatttt 13410890  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 19854336 - 19854383
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  19854336 ggtggcatttagaatgggtgagggaaagaatttcccaccataggaaag 19854383  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 24098277 - 24098218
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    |||||||||||| |||||||| |||||||| ||| ||| |||||||||||||||| ||||    
T  24098277 agggaacttctacagtacacctgcaaattacggtgtactggtactctcgcttacaatttt 24098218  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 43237354 - 43237413
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||||||||| ||||||| |||||||| ||| || ||||||||||||||||| ||||    
T  43237354 agggaacttctatggtacacctgcaaattacggtgtatcggtactctcgcttacaatttt 43237413  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 3056806 - 3056744
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||| |||||||| |||||| || |||||| ||| |||||||||||||||||||| ||||    
T  3056806 attaggggacttctatggtacactcgtaaattacggtgtaccggtactctcgcttacaatttt 3056744  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 32467449 - 32467399
Alignment:
Q  337 gggaacttctatagtacacccgcaaattaaggtttaccggtactctcgctt 387  Q
    |||||||||||  |||||||||||||||| ||| |||||||||||||||||    
T  32467449 gggaacttctacggtacacccgcaaattacggtgtaccggtactctcgctt 32467399  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 6354734 - 6354697
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6354734 aggtggcatttagggtgggtgagggaaagattttccca 6354697  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 13091323 - 13091274
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactct 382  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||||    
T  13091323 attagggaacttctacggtacacccgtaaattaaggtgtaccggtactct 13091274  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 36338843 - 36338903
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||| |||||||| ||||||||| |||||| ||| |||| ||||||||||||||| ||||    
T  36338843 taggggacttctatggtacacccgtaaattacggtgtaccagtactctcgcttacaatttt 36338903  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 18669867 - 18669902
Alignment:
Q  216 gtggcatttagggtgggtgagggaaagaatttccca 251  Q
    |||||||||||||||||||||||||||| |||||||    
T  18669867 gtggcatttagggtgggtgagggaaagagtttccca 18669902  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 18228456 - 18228518
Alignment:
Q  333 attagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||||| | |||||| ||||||||| |||||| ||| ||||||||||||| |||||| ||||    
T  18228456 attaggggatttctatggtacacccgtaaattacggtctaccggtactctcacttacaatttt 18228518  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 39949490 - 39949520
Alignment:
Q  213 taggtggcatttagggtgggtgagggaaaga 243  Q
    |||||||||||||||||||||||||||||||    
T  39949490 taggtggcatttagggtgggtgagggaaaga 39949520  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 41785530 - 41785497
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttc 248  Q
    ||||||||||||||||||||||||||||| ||||    
T  41785530 ggtggcatttagggtgggtgagggaaagagtttc 41785497  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 2141650 - 2141590
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacattttt 395  Q
    ||||| |||||||| ||||||||  |||||| ||| ||||| |||||||||||||| ||||    
T  2141650 taggggacttctatggtacacccataaattacggtgtaccgttactctcgcttacaatttt 2141590  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 12362356 - 12362400
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtact 380  Q
    ||||||||||||  ||||| |||||||||||||| ||||||||||    
T  12362356 agggaacttctaaggtacatccgcaaattaaggtgtaccggtact 12362400  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 39950382 - 39950334
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    ||||||||||||||||||| | |||||||| ||||||| ||| ||||||    
T  39950382 aggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaag 39950334  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 41784622 - 41784650
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaaga 243  Q
    |||||||||||||||||||||||||||||    
T  41784622 ggtggcatttagggtgggtgagggaaaga 41784650  T

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Target: scaffold0283 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 6646 - 6584
Alignment:
Q  335 tagggaacttctatagtacacccgcaaattaaggtttaccggtactctcgcttacatttttat 397  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  6646 tagggaacttctacggtacacccgcaatttaaggtgtaccggtactctcggttacatttttat 6584  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 44184 - 44232
Alignment:
Q  214 aggtggcatttagggtgggtgagggaaagaatttcccatcataggaaag 262  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  44184 aggtggcatttagggtgggtgaggcaaagagtttcccattataggaaag 44232  T

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Target: scaffold0625 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 6265 - 6310
Alignment:
Q  336 agggaacttctatagtacacccgcaaattaaggtttaccggtactc 381  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||    
T  6265 agggaacttctacggtacacccgcaaattaaggtgtaccggtactc 6310  T

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Target: scaffold1052 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 1617 - 1568
Alignment:
Q  212 ataggtggcatttagggtgggtgagggaaagaatttcccatcataggaaa 261  Q
    |||||||||||||||||||||| ||||||||| || |||| ||| |||||    
T  1617 ataggtggcatttagggtgggtaagggaaagagttacccaccattggaaa 1568  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 2755 - 2719
Alignment:
Q  215 ggtggcatttagggtgggtgagggaaagaatttccca 251  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  2755 ggtggcatttagggttggtgagggaaagaattcccca 2719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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