View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_33 (Length: 391)
Name: NF21284_low_33
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 2900524 - 2900900
Alignment:
| Q |
1 |
agagccaaagcaaattattgttacccgtaaaggaatgttggacccgttggaggttcacttgttggatttccccaatattgttatcaaaggaagtgagctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2900524 |
agagccaaagcaaattattgttacccgtaaaggaatgttggacccgttggaggttcacttgttggatttccccaatattgttatcaaaggaagtgagctg |
2900623 |
T |
|
| Q |
101 |
caacttcctttccaagcatgcttgaaaattgagaaatttggggatcttattttgaaggccacagaaccacaaatggttttgttcaacatttacgacgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2900624 |
caacttcctttccaagcatgcttgaaaattgagaaatttggggatcttattttgaaggccacagaaccacaaatggttttgttcaacatttacgacgact |
2900723 |
T |
|
| Q |
201 |
ggctgaagagcatttcctcatacactgcattctccaggctgattcttattctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2900724 |
ggctgaagagcatttcctcatacactgcattctccaggctgattcttattctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcc |
2900823 |
T |
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| Q |
301 |
tgacataactgctgtcactgaacctcatcacatctggccttctctaagtgatgaccagtggatgaaggtggaggttg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2900824 |
tgacataactgctgtcactgaacctcatcacatctggccttctctaagtgatgaccagtggatgaaggtggaggttg |
2900900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 3 - 369
Target Start/End: Complemental strand, 44777155 - 44776789
Alignment:
| Q |
3 |
agccaaagcaaattattgttacccgtaaaggaatgttggacccgttggaggttcacttgttggatttccccaatattgttatcaaaggaagtgagctgca |
102 |
Q |
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| T |
44777155 |
agcccaagcagattattgttactcgtaaaggaatgttggacccattggaggttcacttgctggatttccccaatattgttatcaaaggaagtgagctgca |
44777056 |
T |
|
| Q |
103 |
acttcctttccaagcatgcttgaaaattgagaaatttggggatcttattttgaaggccacagaaccacaaatggttttgttcaacatttacgacgactgg |
202 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||| |
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| T |
44777055 |
gcttcctttccaagcttgtttgaaaattgagaaatttggggatctcattttgaaggccacagaaccacaaatggttttattcaacatttatgatgactgg |
44776956 |
T |
|
| Q |
203 |
ctgaagagcatttcctcatacactgcattctccaggctgattcttattctgcgtgcacttcatgtgaataatgaaaaggcaaagatgttactgaggcctg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
44776955 |
ctgaagagcatttcctcatacactgcattctccaggctgattctgattctgcgtgcacttcatgtgaataatgaaaaggcgaagatgttactgaagcctg |
44776856 |
T |
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| Q |
303 |
acataactgctgtcactgaacctcatcacatctggccttctctaagtgatgaccagtggatgaaggt |
369 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776855 |
acaaaactatcgtcactgaacctcatcacatctggccttctctaagtgatgaccagtggatgaaggt |
44776789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 39874011 - 39873827
Alignment:
| Q |
3 |
agccaaagcaaattattgttacccgtaaaggaatgttggacccgttggaggttcacttgttggatttccccaatattgttatcaaaggaagtgagctgca |
102 |
Q |
| |
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|||| ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
39874011 |
agcccaagcagattattgttactcgtaaaggaatgttggacccattggaagttcacttgctggatttccccaatattgttatcaaaggaagtgagcttca |
39873912 |
T |
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| Q |
103 |
acttcctttccaagcatgcttgaaaattgagaaatttggggatcttattttgaaggccacagaaccacaaatggttttgttcaac |
187 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
39873911 |
gcttcctttccaagcttgtttgaaaattgagaaatttggggatctcattttgaaggccacagaaccacaaatggttttattcaac |
39873827 |
T |
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