View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_35 (Length: 372)
Name: NF21284_low_35
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 351
Target Start/End: Complemental strand, 45901099 - 45900766
Alignment:
| Q |
6 |
accaacacaccattggcaacagagaggcaaggcccgccagcaggagcagcgtcttggaggacgacagtaacgagccgaaaggcaaaagagttgagatggt |
105 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45901099 |
accaacacaccattggcaacagagaggcaagtcccgccagcaggagcagcgtcttggaggacgacagtaacgagccgagaggcaaaagagttgagatggt |
45901000 |
T |
|
| Q |
106 |
cggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggagcgagagtggaga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45900999 |
cggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggagcgagagtggaga |
45900900 |
T |
|
| Q |
206 |
aaacactatgttctcgtcgaattgttctaacttggagaacagatgtttggcta-atgtagggaaacttatgtttgtttggtgttttatttacggatggaa |
304 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| || |||||||||||||| |
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| T |
45900899 |
aaacact-------------attgttctaacttggagaacagatgtttggctatatgtagggaaacatttgtttgtttggtgcttgatttacggatggaa |
45900813 |
T |
|
| Q |
305 |
ttcattactgttttgagagacacatcctcagttttgttgccgcttga |
351 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
45900812 |
ttcattactgttttgagagaaacatcctcagttttgttgctgcttga |
45900766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 351
Target Start/End: Original strand, 46527717 - 46527886
Alignment:
| Q |
183 |
ataacttggagcgagagtggagaaaacactatgttctcgtcgaattgttctaacttggagaacagatgtttggcta-atgtagggaaacttatgtttgtt |
281 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| || | ||||||| ||||||||||||||||||||||| | | ||| |||||| | |||||||| |
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| T |
46527717 |
ataacttggagcgagagtggagaaaacacgatgttcttgttggattgttccaacttggagaacagatgtttggcaacaagtaaggaaacatttgtttgtt |
46527816 |
T |
|
| Q |
282 |
tggtgttttatttacggatggaattcattactgttttgagagacacatcctcagttttgttgccgcttga |
351 |
Q |
| |
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||||| || ||| ||||||| || ||||| ||||| |||||| |||||||||||||||||| |||||| |
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|
| T |
46527817 |
tggtgcttgattcacggatgaaagtcattgctgttacgagagaatcatcctcagttttgttgctgcttga |
46527886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 46490236 - 46490022
Alignment:
| Q |
5 |
caccaacacaccattggcaacagagaggcaaggcccgccagcaggagcagcgtcttggaggacgacagtaacgagccgaaaggcaaaagagttgagatgg |
104 |
Q |
| |
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|||| ||||||| | | ||| |||||| | ||| |||||||| |||||| |||||| ||| | ||| | ||||||| | |||| || |||||||| || |
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| T |
46490236 |
cacccacacaccgtcgacaaaagagagacgaggtccgccagcgggagcaccgtctttgagaatgacggaaacgagcttagaggcgaatgagttgagttga |
46490137 |
T |
|
| Q |
105 |
tcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggagcgagagtggag |
204 |
Q |
| |
|
|||||||| | | |||||||||||| | |||||| |||||||| | || |||| |||||||| ||||||||||| | |||||||||||| ||||| | |
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| T |
46490136 |
tcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagtacaacttggagcgaaagtggcg |
46490037 |
T |
|
| Q |
205 |
aaaacactatgttct |
219 |
Q |
| |
|
| ||||| ||||||| |
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|
| T |
46490036 |
ataacacaatgttct |
46490022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 5155382 - 5155249
Alignment:
| Q |
95 |
gttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggagc |
194 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||| || |||||| |||||||| |||||||||| |||||||| |||||||| || | |||||| || |
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| T |
5155382 |
gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga |
5155283 |
T |
|
| Q |
195 |
gagagtggagaaaacactatgttctcgtcgaatt |
228 |
Q |
| |
|
|| ||||| |||||||| ||||||| ||| |||| |
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|
| T |
5155282 |
gacagtggcgaaaacacaatgttcttgtctaatt |
5155249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 46478405 - 46478282
Alignment:
| Q |
94 |
agttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggag |
193 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||| || ||| || ||||| || |||||||||| ||||| ||| || || || || | ||||||||| |
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| T |
46478405 |
agttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggag |
46478306 |
T |
|
| Q |
194 |
cgagagtggagaaaacactatgtt |
217 |
Q |
| |
|
|| |||||||||||||| ||||| |
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| T |
46478305 |
tgaaagtggagaaaacacgatgtt |
46478282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 16024035 - 16023946
Alignment:
| Q |
121 |
ggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggagcgagagtggagaaaaca |
210 |
Q |
| |
|
|||||||||||| |||||| |||||||| || ||||| | |||||||| || | |||||||| |||||| || || || |||||||||| |
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| T |
16024035 |
ggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaaca |
16023946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 15555269 - 15555062
Alignment:
| Q |
10 |
acacaccattggcaacagagaggcaaggcccgccagcaggagcagcgtcttggaggacgacagtaacgagccgaaaggcaaaagagttgagatggtcggt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||| ||| | |||||| ||| || | |||||||| || | | | |
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|
| T |
15555269 |
acacaccattggcgacagagaggcaaggcccgccggagggagcagcgtctttgaggatgacggaaacgaggcgagagatgacggagttgagttgatggat |
15555170 |
T |
|
| Q |
110 |
ggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggagcgagagtggagaaaac |
209 |
Q |
| |
|
||||| ||| ||||||||| || ||| || || ||||| | |||||||| |||||||| |||||||||||||||||||| | |||||| || |||||| |
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|
| T |
15555169 |
ggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaac |
15555070 |
T |
|
| Q |
210 |
actatgtt |
217 |
Q |
| |
|
|| ||||| |
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|
| T |
15555069 |
acaatgtt |
15555062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 35160635 - 35160509
Alignment:
| Q |
93 |
gagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttgga |
192 |
Q |
| |
|
||||||||||| || ||||||| || ||||||||| | |||||| |||||||||| |||||||| ||||||| || |||||||| | |||||||| |
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|
| T |
35160635 |
gagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttgga |
35160536 |
T |
|
| Q |
193 |
gcgagagtggagaaaacactatgttct |
219 |
Q |
| |
|
| || | ||| |||||||| ||||||| |
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|
| T |
35160535 |
gagacaatggcgaaaacacgatgttct |
35160509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 37147611 - 37147556
Alignment:
| Q |
10 |
acacaccattggcaacagagaggcaaggcccgccagcaggagcagcgtcttggagga |
66 |
Q |
| |
|
||||||||||||| ||||| |||| ||||| ||| |||||||||||||||| ||||| |
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|
| T |
37147611 |
acacaccattggctacagaaaggcgaggcc-gcccgcaggagcagcgtctttgagga |
37147556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 9677553 - 9677734
Alignment:
| Q |
12 |
acaccattggcaacagagaggcaaggcccgccagcaggagcagcgtcttggaggacgacagtaacgagccgaaaggcaaaagagttgagatggtcggtgg |
111 |
Q |
| |
|
||||||||||| | |||||||| ||| || || | || ||| || |||| ||||| ||||| || ||| || || | || ||||||||||| ||| ||| |
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|
| T |
9677553 |
acaccattggcgaaagagaggcgaggaccaccggaagaagctgcatctttgaggaggacagaaaggagatgagagacgaaggagttgagatgatcgatgg |
9677652 |
T |
|
| Q |
112 |
attcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttggag |
193 |
Q |
| |
|
||| || ||||||||| || |||||| ||||| || |||||||||| |||||||| ||||| ||||||| ||||||||| |
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|
| T |
9677653 |
atttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaacttggag |
9677734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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