View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_37 (Length: 354)

Name: NF21284_low_37
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_37
NF21284_low_37
[»] chr8 (11 HSPs)
chr8 (13-164)||(10404856-10404999)
chr8 (244-336)||(10404245-10404337)
chr8 (61-159)||(38082195-38082294)
chr8 (77-159)||(15081454-15081535)
chr8 (61-159)||(2262628-2262725)
chr8 (77-125)||(9295250-9295298)
chr8 (61-129)||(22512155-22512224)
chr8 (65-149)||(12310755-12310838)
chr8 (61-142)||(18180792-18180873)
chr8 (61-124)||(22921959-22922023)
chr8 (85-149)||(37490848-37490910)
[»] chr1 (9 HSPs)
chr1 (63-159)||(50005237-50005332)
chr1 (62-142)||(45085645-45085726)
chr1 (68-149)||(28260269-28260349)
chr1 (77-126)||(13192935-13192984)
chr1 (61-142)||(40804558-40804640)
chr1 (68-145)||(11923788-11923863)
chr1 (58-118)||(12486331-12486392)
chr1 (77-125)||(50335811-50335860)
chr1 (61-140)||(50857553-50857634)
[»] chr6 (4 HSPs)
chr6 (77-159)||(27142601-27142682)
chr6 (61-140)||(2339157-2339237)
chr6 (69-145)||(8568707-8568781)
chr6 (58-124)||(19474728-19474795)
[»] chr4 (7 HSPs)
chr4 (61-159)||(54239490-54239587)
chr4 (61-159)||(15634545-15634644)
chr4 (61-138)||(38223136-38223213)
chr4 (84-125)||(18490424-18490465)
chr4 (61-140)||(13085201-13085280)
chr4 (77-145)||(34943575-34943642)
chr4 (61-152)||(6659439-6659531)
[»] chr2 (6 HSPs)
chr2 (67-142)||(5841205-5841278)
chr2 (61-140)||(8781414-8781493)
chr2 (61-152)||(27952427-27952520)
chr2 (61-152)||(27956263-27956356)
chr2 (61-141)||(33655525-33655608)
chr2 (61-94)||(44675330-44675363)
[»] chr7 (5 HSPs)
chr7 (65-126)||(32052957-32053018)
chr7 (61-151)||(22572497-22572585)
chr7 (58-142)||(4303347-4303433)
chr7 (61-119)||(32936869-32936926)
chr7 (61-94)||(31577291-31577324)
[»] chr5 (6 HSPs)
chr5 (59-126)||(15385061-15385128)
chr5 (61-159)||(35160836-35160932)
chr5 (61-125)||(36844439-36844503)
chr5 (68-145)||(7775315-7775390)
chr5 (61-159)||(19677239-19677338)
chr5 (61-152)||(40778895-40778988)
[»] scaffold0251 (1 HSPs)
scaffold0251 (61-158)||(8264-8361)
[»] scaffold0154 (1 HSPs)
scaffold0154 (61-112)||(28711-28762)
[»] chr3 (5 HSPs)
chr3 (65-125)||(1151119-1151179)
chr3 (61-96)||(20398508-20398543)
chr3 (61-152)||(4580453-4580543)
chr3 (61-125)||(5128824-5128889)
chr3 (61-94)||(43304069-43304102)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 10404999 - 10404856
Alignment:
Q  13 aatatgacgcagaaattagcaagcgctaaatctaaaaataaacggattaaataagggttttcgaaatccaccagaattgagaaatgttctcgataatttt 112  Q
    |||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||| ||||||||| |||        |||||||||||||||    
T  10404999 aatatgacgcagaaattagcaagcgctaaacctaaaaataaatccattaaataagggttttcggaatccaccataat--------gttctcgataatttt 10404908  T
Q  113 attgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaatgatgg 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10404907 attgaatgaaaaaagtgcctcttaggctacgaaagctctggttaaatgatgg 10404856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 10404337 - 10404245
Alignment:
Q  244 atatcgagaccaatccctattttttaagttggtaccataaaagaaccctatttagattatcaaaaagtattatgaactaggttatggttatgg 336  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10404337 atatcgagaccaatccctattttttaagttggtaccatgaaagaaccctatttagattatcaaaaagtattatgaactaggttatggttatgg 10404245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 38082195 - 38082294
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataatttt-attgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||||||  | |||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||    
T  38082195 aaataagggtttcaggaatctatcagaattgagaaaagttctcgataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaat 38082294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 15081535 - 15081454
Alignment:
Q  77 aatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||| |||||||||||| ||||||||||||||||||||| | ||||| |||||||||| ||||||||||| || ||||||    
T  15081535 aatccacaagaattgagaaaagttctcgataattttattgaa-ggaaaaactgcctcttagactacgaaagttttgtttaaat 15081454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 2262725 - 2262628
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||||||||| |||| || | |||||||||| |||||| || |||||||||||||| |||| ||| |||||| ||||||||||| || ||||||    
T  2262725 aaataagggttttcggaatctactaaaattgagaaaagttctccatgattttattgaatga-aaaactgcatcttagactacgaaagttatgtttaaat 2262628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 9295298 - 9295250
Alignment:
Q  77 aatccaccagaattgagaaatgttctcgataattttattgaatgaaaaa 125  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  9295298 aatccaccagaattgagaaaagttctcgataattttattgaatgtaaaa 9295250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 22512155 - 22512224
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaaagtg 129  Q
    |||||||||||| ||||||||||||||||||||| |   ||||| ||||||||||||||| |||||||||    
T  22512155 aaataagggtttccgaaatccaccagaattgagagaaaatctcgaataattttattgaataaaaaaagtg 22512224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 12310838 - 12310755
Alignment:
Q  65 aagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagtt 149  Q
    ||||||||||| | ||||||| | || ||||| ||| |||||| |||||||||||| ||||  ||||||||||||||||||||||    
T  12310838 aagggttttcggagtccaccaaatttaagaaaagttatcgatatttttattgaatg-aaaagttgcctcttaggctacgaaagtt 12310755  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 18180792 - 18180873
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaaagtgcctcttaggctac 142  Q
    |||||||||||| |  |||||||||||||||||| |   ||||| |||||||||||||||  |||||||||||||||||||||    
T  18180792 aaataagggtttccagaatccaccagaattgagagaaaatctcgaataattttattgaat-caaaaagtgcctcttaggctac 18180873  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 22921959 - 22922023
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaa 124  Q
    |||||||||||| || |||||||||||||||||| |   ||||| ||||||||||||||| ||||    
T  22921959 aaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaa 22922023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 37490848 - 37490910
Alignment:
Q  85 agaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagtt 149  Q
    ||||||| ||||| || |||||| |||||||||||||||||| ||| ||||||| ||||||||||    
T  37490848 agaattgcgaaattttttcgata-ttttattgaatgaaaaaa-tgcatcttaggttacgaaagtt 37490910  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 50005237 - 50005332
Alignment:
Q  63 ataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||    
T  50005237 ataagggttttcggaatccatcaaaattgagaaaagttctcgataattttattgaatg-aaaaggtgtctcttaggctacgaaagttctgtttaaat 50005332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 45085726 - 45085645
Alignment:
Q  62 aataagggttttcgaaatccaccagaatt--gagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctac 142  Q
    |||||| ||||||||||||||||||||||  |||||| |||||| |||| ||||||||||| ||||| |||||||||||||||    
T  45085726 aataagagttttcgaaatccaccagaattgagagaaaagttctcaataagtttattgaatg-aaaaactgcctcttaggctac 45085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 28260269 - 28260349
Alignment:
Q  68 ggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagtt 149  Q
    |||||||| ||||||| |||||||| ||| |||||||||| ||||||||||||  |||| ||||| ||||||||||||||||    
T  28260269 ggttttcggaatccactagaattgaaaaaagttctcgatatttttattgaatg-caaaactgccttttaggctacgaaagtt 28260349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 13192935 - 13192984
Alignment:
Q  77 aatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaa 126  Q
    ||||||||||||||||||||  ||||| |||| |||||||||||||||||    
T  13192935 aatccaccagaattgagaaaacttctctataaatttattgaatgaaaaaa 13192984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 40804640 - 40804558
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga-aatgttctcgataattttattgaatgaaaaaagtgcctcttaggctac 142  Q
    ||||| |||||| | ||||||||||||||||||| ||   ||||||  || |||||||||||||||  |||||||||||||||    
T  40804640 aaatacgggtttccaaaatccaccagaattgagagaaaagtctcgaatatattattgaatgaaaaagttgcctcttaggctac 40804558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 11923863 - 11923788
Alignment:
Q  68 ggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaa 145  Q
    |||||||| ||||||| |||||| ||||| || || |||||||||||||||||  |||| || |||||||||||||||    
T  11923863 ggttttcgtaatccactagaattaagaaaagt-ctagataattttattgaatg-gaaaactgtctcttaggctacgaa 11923788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 12486331 - 12486392
Alignment:
Q  58 attaaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaa 118  Q
    |||||||||||||||||| ||||||||| |||||||| |   ||||| ||||||||||||||    
T  12486331 attaaataagggttttcggaatccaccaaaattgagagaaaatctcgaataattttattgaa 12486392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 50335860 - 50335811
Alignment:
Q  77 aatccaccagaa-ttgagaaatgttctcgataattttattgaatgaaaaa 125  Q
    |||||||||||| |||||||| |||||| ||||||||||| |||||||||    
T  50335860 aatccaccagaaattgagaaaagttctcaataattttattaaatgaaaaa 50335811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 50857553 - 50857634
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaa-agtgcctcttaggct 140  Q
    |||||||||||| || |||||||||||||||||| |   ||||| |||||||||||| || |||||  ||||||||||||||    
T  50857553 aaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgtatcaaaaagtgtgcctcttaggct 50857634  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 27142601 - 27142682
Alignment:
Q  77 aatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  27142601 aatccaccataattgagaaaagttttcgataattttattgaatg-aaaaactgcctcttaggctacgaaagttctgtttaaat 27142682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 2339157 - 2339237
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga-aatgttctcgataattttattgaatgaaaaaagtgcctcttaggct 140  Q
    |||||||||||| ||||||||||||||||||||| ||   ||||||||||||||||||||||||||  |||||||||||||    
T  2339157 aaataagggtttccgaaatccaccagaattgagagaaaagtctcgataattttattgaatgaaaaagatgcctcttaggct 2339237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 8568707 - 8568781
Alignment:
Q  69 gttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaa 145  Q
    ||||||| ||||||| |||||| ||||| || || |||||||||||||||||  |||| || |||||||||||||||    
T  8568707 gttttcggaatccactagaattaagaaaagt-ctagataattttattgaatg-gaaaactgtctcttaggctacgaa 8568781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 19474728 - 19474795
Alignment:
Q  58 attaaataagggttttcgaaatccaccagaatt-gagaaatgttctcgataatttt-attgaatgaaaa 124  Q
    |||||||||||||||||||||||||| |||||| ||||||  |  ||||||||||| ||||||||||||    
T  19474728 attaaataagggttttcgaaatccactagaatttgagaaaaata-tcgataatttttattgaatgaaaa 19474795  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 54239587 - 54239490
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| || ||||| ||  ||||||||||| |||||| || ||||||    
T  54239587 aaataagggttttcggaatccaccaaaattgagaaaagttctcgataattttattgattg-aaaaactgtatcttaggctaccaaagttttgtttaaat 54239490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 15634644 - 15634545
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaa-aaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||| ||||| | ||||||  ||||| ||||||  |||||||| ||||||||||||||| ||||||| ||||||| ||||||||||| || ||||||    
T  15634644 aaataagagtttttggaatccattagaatagagaaaatttctcgattattttattgaatgaaaaaaagtgtctcttagactacgaaagttatgtttaaat 15634545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 38223136 - 38223213
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataatttt-attgaatgaaaaaagtgcctcttagg 138  Q
    |||||||||||| |  ||||||| |||||||||||| || |||||||||||| ||||||||||||||||| ||||||||    
T  38223136 aaataagggtttacagaatccactagaattgagaaaagt-ctcgataatttttattgaatgaaaaaagtgtctcttagg 38223213  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 18490465 - 18490424
Alignment:
Q  84 cagaattgagaaatgttctcgataattttattgaatgaaaaa 125  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  18490465 cagaattgagaaaagttctcgataattttattgaatgaaaaa 18490424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 13085201 - 13085280
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaaagtgcctcttaggct 140  Q
    ||||||||||||||| ||||||||| |||||||| |   ||||| ||||||||||||||| ||||||||| ||||||||||    
T  13085201 aaataagggttttcggaatccaccaaaattgagagaaaatctcgaataattttattgaat-aaaaaagtgtctcttaggct 13085280  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 34943575 - 34943642
Alignment:
Q  77 aatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaa 145  Q
    ||||||||| |||||| |||||||||| ||||||||||||||| |||||| |  |||||||||||||||    
T  34943575 aatccaccaaaattgataaatgttctctataattttattgaat-aaaaaattttctcttaggctacgaa 34943642  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 6659439 - 6659531
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctg 152  Q
    |||||||||||| || |||||||||||||||||| |   ||||| ||| ||||| ||||| |||||  |||||||||||||||  ||||||||    
T  6659439 aaataagggtttccggaatccaccagaattgagagaaaatctcgaatagttttagtgaatcaaaaagttgcctcttaggctacataagttctg 6659531  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 5841278 - 5841205
Alignment:
Q  67 gggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctac 142  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||    
T  5841278 gggttttcggaatccacaagaattgagaaaagttctcgataattttattgaatgaaaatagt--ctcttaggctac 5841205  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 8781493 - 8781414
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcga-taattttattgaatgaaaaaagtgcctcttaggct 140  Q
    |||||||||||| |||||||||||||||||||||     |||||| |||||||||||||||||||||||||||||||||||    
T  8781493 aaataagggttt-cgaaatccaccagaattgagagtaaatctcgaataattttattgaatgaaaaaagtgcctcttaggct 8781414  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 27952427 - 27952520
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaa-agtgcctcttaggctacgaaagttctg 152  Q
    |||||||||||| || |||||||||||||||||| |   ||||| ||||||||||||||| |||||  ||||||||||||||||  ||||||||    
T  27952427 aaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctg 27952520  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 27956263 - 27956356
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaa-agtgcctcttaggctacgaaagttctg 152  Q
    |||||||||||| || |||||||||||||||||| |   ||||| ||||||||||||||| |||||  ||||||||||||||||  ||||||||    
T  27956263 aaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctg 27956356  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 33655608 - 33655525
Alignment:
Q  61 aaataagggttttcgaaatccaccagaa-ttgagaaatgttctcga-taattttattgaatgaaaaa-agtgcctcttaggcta 141  Q
    |||||||||||| || |||||||||||| |||||| |   |||||| ||||||||||||||||||||  |||||||||||||||    
T  33655608 aaataagggtttccggaatccaccagaaattgagagaaaatctcgaataattttattgaatgaaaaagtgtgcctcttaggcta 33655525  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 44675330 - 44675363
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga 94  Q
    ||||||||||||||| ||||||||||||||||||    
T  44675330 aaataagggttttcggaatccaccagaattgaga 44675363  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 32053018 - 32052957
Alignment:
Q  65 aagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaa 126  Q
    |||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  32053018 aagggtttccgaaatccaccagaattgagaaaagttttctataattttattgaatgaaaaaa 32052957  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 22572497 - 22572585
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttct 151  Q
    |||||||||||| || ||||||| |||||||||||| ||||||||| |||||||| | ||  ||||||||||||||| |||| ||||||||    
T  22572497 aaataagggtttccggaatccacaagaattgagaaaagttctcgattattttatttattg--aaaagtgcctcttagactaccaaagttct 22572585  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 4303433 - 4303347
Alignment:
Q  58 attaaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaa-agtgcctcttaggctac 142  Q
    |||||||||||||||||| ||||||| |||||||||| |   ||||| ||||||||||||||| |||||  ||||||||||||||||    
T  4303433 attaaataagggttttcggaatccactagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctac 4303347  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 32936869 - 32936926
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaat 119  Q
    ||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||    
T  32936869 aaataagggttttcggaatccaccataattgagaaa-attctcgataattttattgaat 32936926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 31577291 - 31577324
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga 94  Q
    |||||||||||| |||||||||||||||||||||    
T  31577291 aaataagggtttccgaaatccaccagaattgaga 31577324  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 15385061 - 15385128
Alignment:
Q  59 ttaaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaa 126  Q
    ||||||||| |||| |||||||||  | |||||||||| |||||||||||||||||||||||||||||    
T  15385061 ttaaataagagtttccgaaatccattaaaattgagaaaagttctcgataattttattgaatgaaaaaa 15385128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 35160836 - 35160932
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||||||  | | |||||||||||| ||||| |||||||||||||||||||||||  ||||  ||||||||| |||| ||||||||| ||||||    
T  35160836 aaataagggtttcaggattccaccagaattaagaaaagttctcgataattttattgaatg--aaaacggcctcttagactaccaaagttctgtttaaat 35160932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 36844439 - 36844503
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaa 125  Q
    ||||||||||||||| |||||| | |||| ||| || |||||||||||||||||| |||||||||    
T  36844439 aaataagggttttcggaatccagcggaatagaggaaagttctcgataattttattaaatgaaaaa 36844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 7775390 - 7775315
Alignment:
Q  68 ggttttcgaaatccaccagaattgagaaatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaa 145  Q
    |||||||| ||||||| |||||| ||||| || || ||||||||||||||||| ||||| || |||||||||||||||    
T  7775390 ggttttcggaatccactagaattaagaaaagt-ctagataattttattgaatggaaaaa-tgtctcttaggctacgaa 7775315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 19677239 - 19677338
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga-aatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaat 159  Q
    ||||||||||||||| |||||||||||||||||| ||   ||||||  ||||||||||||  |||  |||||||||||| | |  |||||||| ||||||    
T  19677239 aaataagggttttcggaatccaccagaattgagagaaaagtctcgaatattttattgaatacaaagtgtgcctcttaggatgcataagttctgtttaaat 19677338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 40778895 - 40778988
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaa-agtgcctcttaggctacgaaagttctg 152  Q
    ||||||||||||  | |||||||||||||||||| |   ||||| ||||||||||||||| |||||  ||||||||||| ||||  ||||||||    
T  40778895 aaataagggtttctggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttagactacataagttctg 40778988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 8264 - 8361
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaat-gttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctggttaaa 158  Q
    ||||||||||||  | |||||| |||||||||||||  | |||||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||    
T  8264 aaataagggtttctggaatccatcagaattgagaaaaagatctcgaaaatttgattgaatgaaaaa-gtgtctcttaggctacgaaagttctgtttaaa 8361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 28711 - 28762
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcgataatttt 112  Q
    |||||||||||| || |||| ||||||||||||||| |||||||||||||||    
T  28711 aaataagggtttccggaatctaccagaattgagaaaagttctcgataatttt 28762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 1151179 - 1151119
Alignment:
Q  65 aagggttttcgaaatccaccagaattgagaaatgttctcgataa-ttttattgaatgaaaaa 125  Q
    ||||||||||| |||||||||||||||||||| | |||| |||| |||||||||||||||||    
T  1151179 aagggttttcggaatccaccagaattgagaaaag-tctctataatttttattgaatgaaaaa 1151119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 20398508 - 20398543
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaa 96  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20398508 aaataagggttttcggaatccaccagaattgagaaa 20398543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 4580543 - 4580453
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga-aatgttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagttctg 152  Q
    ||||||||||||||  ||||||| |||||||||| ||  |||||||  |||||||||||||  |||||||| ||||| ||| | |||||||||    
T  4580543 aaataagggttttcagaatccactagaattgagagaaaattctcgaatattttattgaatg--aaaagtgcatcttacgctgcaaaagttctg 4580453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 5128889 - 5128824
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgagaaatgttctcg-ataattttattgaatgaaaaa 125  Q
    |||||||||||| || |||||||||||||||||| |   ||||| ||||||||||||||| |||||    
T  5128889 aaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaa 5128824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 43304069 - 43304102
Alignment:
Q  61 aaataagggttttcgaaatccaccagaattgaga 94  Q
    |||||||||||| |||||||||||||||||||||    
T  43304069 aaataagggtttccgaaatccaccagaattgaga 43304102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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