View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_4 (Length: 802)
Name: NF21284_low_4
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 37925745 - 37926102
Alignment:
| Q |
9 |
acatcatcaactacaccct-acaagcaaggtcgagactctagattctagaatatgtgcaccacccagactaggatagtacatccttcaagaactacaagt |
107 |
Q |
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| T |
37925745 |
acatcatcaactacacccttacaagcaaggtcgagactctagattctagaatatgtgcaccacccagactaggatagtacatccttcaagaactacaagt |
37925844 |
T |
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| Q |
108 |
aagacctgcagtgaattagtaaatcaatcatagcaccaaatgattttattaaatacattgatcatatgtacaaagtagtgattcaatactatgaggagat |
207 |
Q |
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| T |
37925845 |
aagacctacagtgaattagtaaatcaatcatagcaccaaatgattttattaaatacattgatcatatgtacaaagtagtgattcaatactatgaagagat |
37925944 |
T |
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| Q |
208 |
gacatgatggcaatgacctcgaacgagaaaaaaggtcatgcatcggaggatggttaaacaatcacgaattactaacgtagtctaatatatgatgaattac |
307 |
Q |
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| T |
37925945 |
gacatgatggcaatgacctctaacaagaaaaaagatcatgcatcggaggatggttaaacaatcacgaattactaacgtagtctaatatatgatgaattac |
37926044 |
T |
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| Q |
308 |
taacgtatatgtgatagacgtttgagtctcttgatcaattggttagagattcaatctc |
365 |
Q |
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| T |
37926045 |
taatatatatgtgatagacgtttgagtctcttgatcaattggttagagattcaatctc |
37926102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 452 - 762
Target Start/End: Original strand, 37926217 - 37926527
Alignment:
| Q |
452 |
ataacctccttgatctttaaatacttgttgcatagtccataaagcttgaaggtattaaattttctcatagattcaannnnnnngtagttgtttggccatt |
551 |
Q |
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| T |
37926217 |
ataacctccttgatctttaaatacttgttgcatagtccgtaaagcttgaaggtattaaattttctcataagttcaatttttttgtagttgtttgaccatt |
37926316 |
T |
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| Q |
552 |
cacttttttgtagatgctttcttcatttatgcgagtgtatccaatattattttttatttgtatttgtgttcaagcaagacttgctcgctcataaatcaga |
651 |
Q |
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| T |
37926317 |
cacttttttgtagatgctttcttcatttatgcgagtgtgtccaatattattttttatttgtatttgtgttcaagcaagacatgctcgctcataaatcaga |
37926416 |
T |
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| Q |
652 |
tcatatactcattggacaaagcaattcttcgcatggtcacaaatctaaatgtataatgcttaaacatatataaaagagacatttttaaaaacaataataa |
751 |
Q |
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| T |
37926417 |
tcatatactcattggacaaatcaattcttcacatggtcacaaatctaaatatataatgcttagacatatataaaagagacatttttaaaaacaataataa |
37926516 |
T |
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| Q |
752 |
atgattttata |
762 |
Q |
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| T |
37926517 |
atgatcttata |
37926527 |
T |
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