View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_42 (Length: 338)
Name: NF21284_low_42
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 11664712 - 11664406
Alignment:
| Q |
17 |
atgaatacataacaagnnnnnnntaaagagacatggtacacaattttttaaggttaaaccaaaatcattcaatttatttgatgatttgata---ctttat |
113 |
Q |
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| T |
11664712 |
atgaatacataacaagaaaaaaataaagagacatgatacacaattttttaaggttaaaccaaaatcattccatttatttgatgatttgatattactttat |
11664613 |
T |
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| Q |
114 |
tcttatcaataaaattataaatattttcatattgaagtatcatttgcgtgctctttaggacaataaaattatcttttgcagacaactccttctccatcaa |
213 |
Q |
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| T |
11664612 |
tcttatcaataaaattataaattttttcatattgaagtatcatttgcgtgctctttaggacaataaaattatcttttgcagacaactccttctccatcaa |
11664513 |
T |
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| Q |
214 |
ttccacttgtgcagctcaagctagggagggccaaattctccacaattccaatatttttgtttaatccattgttcccagtgaaacgtgccacagaacaatc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11664512 |
ttccacttgtgcagctcaagctagggagggccaaattctccacaattccaatatttttgtttaatccattgttcccaatgaaacgtgccacagaacaatc |
11664413 |
T |
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| Q |
314 |
tggagag |
320 |
Q |
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||||||| |
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| T |
11664412 |
tggagag |
11664406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 41 - 320
Target Start/End: Original strand, 7343811 - 7344090
Alignment:
| Q |
41 |
aaagagacatgg-tacacaattttttaaggttaaaccaaaatcattcaatttatttgatgatttgatactttattcttatcaataaaattataaatattt |
139 |
Q |
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| T |
7343811 |
aaagagacatgaatacacatttttttaaggttaaaccaaaatcattcaagttatttgatgatttgatactttattcttattaataaaattataatt-ttt |
7343909 |
T |
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| Q |
140 |
tcatattg-aagtatcatttgcgtgctctttaggacaataaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagg |
238 |
Q |
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| T |
7343910 |
tc-tatgggaagtatcatcagcatcctcttttggacaatgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagg |
7344008 |
T |
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| Q |
239 |
gagggccaaattctccacaattccaatatttttgtttaatccattgttcccagtgaaacgtgccacagaacaatctggagag |
320 |
Q |
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| T |
7344009 |
gagggccaaattctccatagttccaatatctttgtttaatccagtgtttccaatgaaacgtgctacagaacaatctggagag |
7344090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 11656091 - 11656013
Alignment:
| Q |
178 |
aaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctccac |
256 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||| || |||| ||||||||| |||||||||||| |
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| T |
11656091 |
aaaattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagactcaaattctccac |
11656013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 11669858 - 11669796
Alignment:
| Q |
179 |
aaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggag |
241 |
Q |
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||||||||| |||| ||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
11669858 |
aaattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggag |
11669796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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