View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_low_45 (Length: 324)
Name: NF21284_low_45
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_45 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 7007192 - 7007485
Alignment:
| Q |
15 |
gatgaagtttgtagggttgatgtgttaatttgttttgtgttatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007192 |
gatgaagtttgtagggttgatgtgttaatttgttttgtgttatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacg |
7007291 |
T |
|
| Q |
115 |
ttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007292 |
ttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattc |
7007391 |
T |
|
| Q |
215 |
atcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatttgcacc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007392 |
atcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatttgcacc |
7007485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 7010260 - 7010563
Alignment:
| Q |
15 |
gatgaagtttgtagggttgatgtgttaatttgtt----------ttgtgttatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatact |
104 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010260 |
gatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatact |
7010359 |
T |
|
| Q |
105 |
atgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttaccc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010360 |
atgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagtgttgaaggagcttgctgaagctaaagctgcttaccc |
7010459 |
T |
|
| Q |
205 |
agaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatttg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7010460 |
agaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcattgctcacacaccagcaacctactaagtttgatatatg |
7010559 |
T |
|
| Q |
305 |
cacc |
308 |
Q |
| |
|
|||| |
|
|
| T |
7010560 |
cacc |
7010563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 1358572 - 1358791
Alignment:
| Q |
60 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1358572 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1358671 |
T |
|
| Q |
160 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1358672 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1358771 |
T |
|
| Q |
260 |
agtttcattgctcacacacc |
279 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1358772 |
agtttcattgcacacacacc |
1358791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 1374124 - 1374343
Alignment:
| Q |
60 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1374124 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1374223 |
T |
|
| Q |
160 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1374224 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1374323 |
T |
|
| Q |
260 |
agtttcattgctcacacacc |
279 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1374324 |
agtttcattgcacacacacc |
1374343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 1394671 - 1394890
Alignment:
| Q |
60 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1394671 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1394770 |
T |
|
| Q |
160 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1394771 |
ttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatc |
1394870 |
T |
|
| Q |
260 |
agtttcattgctcacacacc |
279 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1394871 |
agtttcattgcacacacacc |
1394890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 1350666 - 1350885
Alignment:
| Q |
60 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1350666 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1350765 |
T |
|
| Q |
160 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1350766 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1350865 |
T |
|
| Q |
260 |
agtttcattgctcacacacc |
279 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1350866 |
agtttcattgcacacacacc |
1350885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 1384320 - 1384539
Alignment:
| Q |
60 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1384320 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1384419 |
T |
|
| Q |
160 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1384420 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1384519 |
T |
|
| Q |
260 |
agtttcattgctcacacacc |
279 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1384520 |
agtttcattgcacacacacc |
1384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 1390425 - 1390644
Alignment:
| Q |
60 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
1390425 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1390524 |
T |
|
| Q |
160 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
1390525 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
1390624 |
T |
|
| Q |
260 |
agtttcattgctcacacacc |
279 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
1390625 |
agtttcattgcacacacacc |
1390644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University