View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_low_47 (Length: 322)
Name: NF21284_low_47
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 18101744 - 18102038
Alignment:
| Q |
12 |
atgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18101744 |
atgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
18101843 |
T |
|
| Q |
112 |
agagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacc--agtctcattgccataatggagtttcgaaacattcgcaagctgca |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18101844 |
agagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataatggagtttcgaaacattcgcaagctgca |
18101943 |
T |
|
| Q |
210 |
tcgggtggatagttgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatct |
304 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18101944 |
ttgggtggataattgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatct |
18102038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 37859352 - 37859646
Alignment:
| Q |
12 |
atgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859352 |
atgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
37859451 |
T |
|
| Q |
112 |
agagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacc--agtctcattgccataatggagtttcgaaacattcgcaagctgca |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859452 |
agagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataatggagtttcgaaacattcgcaagctgca |
37859551 |
T |
|
| Q |
210 |
tcgggtggatagttgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatct |
304 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859552 |
ttgggtggataattgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatct |
37859646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University