View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_low_48 (Length: 321)
Name: NF21284_low_48
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_48 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 46490518 - 46490238
Alignment:
| Q |
23 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46490518 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
46490419 |
T |
|
| Q |
123 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccat |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46490418 |
attcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccat |
46490319 |
T |
|
| Q |
223 |
tagtagctacacaatcttccatttggttggtgacgtcgttgctctcatcgactcacttggagttgaccgagtgtttcttgt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
46490318 |
tagtagctacacaatcttccatttggttggtgacatcgttgctctcatcgactcacttggcgttgaccgagtgtttcttgt |
46490238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 46479316 - 46479036
Alignment:
| Q |
23 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
122 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||| ||||||||||||||||||| |
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|
| T |
46479316 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46479217 |
T |
|
| Q |
123 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || || || |
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|
| T |
46479216 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaat |
46479117 |
T |
|
| Q |
223 |
tagtagctacacaatcttccatttggttggtgacgtcgttgctctcatcgactcacttggagttgaccgagtgtttcttgt |
303 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| || ||||||| |||||| ||||| |
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|
| T |
46479116 |
aagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgt |
46479036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 46520746 - 46520466
Alignment:
| Q |
23 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
122 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||| ||||||||||||||||||| |
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|
| T |
46520746 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46520647 |
T |
|
| Q |
123 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || || || |
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|
| T |
46520646 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaat |
46520547 |
T |
|
| Q |
223 |
tagtagctacacaatcttccatttggttggtgacgtcgttgctctcatcgactcacttggagttgaccgagtgtttcttgt |
303 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| || ||||||| |||||| ||||| |
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|
| T |
46520546 |
aagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgt |
46520466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 46524812 - 46524600
Alignment:
| Q |
23 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
122 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
46524812 |
cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46524713 |
T |
|
| Q |
123 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccat |
222 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| | || | |
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|
| T |
46524712 |
attcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagt |
46524613 |
T |
|
| Q |
223 |
tagtagctacaca |
235 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46524612 |
tagtagctacaca |
46524600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 46532365 - 46532175
Alignment:
| Q |
23 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
122 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
46532365 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46532266 |
T |
|
| Q |
123 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
213 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
46532265 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc |
46532175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 46326455 - 46326664
Alignment:
| Q |
26 |
agaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggtatt |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| | |
|
|
| T |
46326455 |
agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact |
46326554 |
T |
|
| Q |
126 |
catggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccattag |
225 |
Q |
| |
|
| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||| |||| | |||||||| |
|
|
| T |
46326555 |
cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatgttccgtcttccattag |
46326654 |
T |
|
| Q |
226 |
tagctacaca |
235 |
Q |
| |
|
||||||||| |
|
|
| T |
46326655 |
cagctacaca |
46326664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 46494819 - 46494551
Alignment:
| Q |
20 |
gagcacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactct |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
46494819 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactct |
46494720 |
T |
|
| Q |
120 |
ggtattcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctc |
219 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| || |||| || || |
|
|
| T |
46494719 |
ggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatgtccccagttc |
46494620 |
T |
|
| Q |
220 |
cattagtagctacacaatcttccatttggttggtgacgtcgttgctctcatcgactcacttggagttga |
288 |
Q |
| |
|
| | || || ||||||||||| |||||||||||| | ||||| ||||||||||| ||||| ||||| |
|
|
| T |
46494619 |
ggtaaacagttatacaatcttccacttggttggtgacattgttgcgctcatcgactcgcttggggttga |
46494551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 46322744 - 46322937
Alignment:
| Q |
20 |
gagcacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactct |
119 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||| |
|
|
| T |
46322744 |
gagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactct |
46322843 |
T |
|
| Q |
120 |
ggtattcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
213 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
46322844 |
ggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc |
46322937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 46517108 - 46516824
Alignment:
| Q |
20 |
gagcacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactct |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | || |||||||| ||||||||||| | || ||||||||||||| || |||||| ||| |
|
|
| T |
46517108 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
46517009 |
T |
|
| Q |
120 |
ggtattcatggcgccaccagattgctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctc |
219 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||| || |||||| | || |||||||||||| |||| || || ||||| |||||||| | || |
|
|
| T |
46517008 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttc |
46516909 |
T |
|
| Q |
220 |
cattagtagctacacaatcttccatttggttggtgacgtcgttgctctcatcgactcacttggagttgaccgagtgtttcttgtg |
304 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||||| || |||||||| || || |||| ||| || |||||| |
|
|
| T |
46516908 |
agttagtagctacacaattttacatttggttggtgatatcgttgctctaattgactcactgggtgtggaccaagttttccttgtg |
46516824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 46464985 - 46464924
Alignment:
| Q |
227 |
agctacacaatcttccatttggttggtgacgtcgttgctctcatcgactcacttggagttga |
288 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
46464985 |
agctacacaatcttccacttagttggtgacatcgttgctctcatagactcacttggggttga |
46464924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 49833688 - 49833648
Alignment:
| Q |
101 |
catggcttccctgaactctggtattcatggcgccaccagat |
141 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
49833688 |
catggcttccctgatctatggtattcatggcgccaccagat |
49833648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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