View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_6 (Length: 786)
Name: NF21284_low_6
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 775
Target Start/End: Complemental strand, 11395862 - 11395103
Alignment:
| Q |
18 |
gttgcgaggcttgaaatccattggatgcattgttcatcttcctatcacaaattccacacnnnnnnntaagtaagattcattgaattacagaaatttaaaa |
117 |
Q |
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| T |
11395862 |
gttgcgaggcttgaaatccattggatgcattgttcatcttcctatcacaaattccacacaaaaaaataagtaatattcattgaattacagaaatttaaaa |
11395763 |
T |
|
| Q |
118 |
ctccgtagaatgnnnnnnnn-gcatatcacagttcatcgcgatatctaacttcatttctagatccattaatttcacatgattcgaacatagcgttacgca |
216 |
Q |
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| T |
11395762 |
ctccgtagaatgaaaaaaaaagcatatcacagttcattgcgatatctaacttcatttctagatccattaatttcacatgattcgaacatagcgttacgca |
11395663 |
T |
|
| Q |
217 |
gaatatactaaactcgaaaacgcggaagtaaaaaataagctaaaatcatactggaacggttgcatttgaaaatatgaacgaagttcaaaattggaatcta |
316 |
Q |
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| T |
11395662 |
gaatatactaaatccgaaaacgaggaagtaaaaaataagctaaaatcatactcgaacggttgcatttgaaaatatgaacgaagttcaaaattggaatcta |
11395563 |
T |
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| Q |
317 |
gaatttgttatataagaatgaaataagtataaacagtgtttccgacttggattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggag |
416 |
Q |
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| T |
11395562 |
gaatttgttatataagaatgaaataagtataaacagtgtttccgacttggattgaagtgaagtgaacctggaataaacgtgaggaggagggaagacggag |
11395463 |
T |
|
| Q |
417 |
atggaggagagatcggaggctttgttgatcttcattttcatatcggctctgaagaaaacggttagcttgcnnnnnnnnnnnnnnnnnnnngagcgagttg |
516 |
Q |
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| T |
11395462 |
atggaggagagatcggaggctttgttgatcttcattttcatatcggatctgaagaaaacggttagctttcagagaaagaagaagaagaaggagcgagttg |
11395363 |
T |
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| Q |
517 |
aaaacaagcgggaatggaacggggatttaaacggagggtgtttgttatgggtttaaaggttttaaaccggatatatatgggtcggatctcggatccacca |
616 |
Q |
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| T |
11395362 |
aaaacaagcgggaatggaacggggatttaaacggagggtgtttgttatgggtttaaaggttttaaaccggatatatatgggtcggatctcggatccacca |
11395263 |
T |
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| Q |
617 |
tttctttgacagaaaaaggtcctgcaatgcaatg-ccagtgtaaagtagttttacacttacgttcaatttgacagnnnnnnnaaaaactgttttaactat |
715 |
Q |
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| T |
11395262 |
tttctttgacagaaaaaggtcctgcaatgcaatgtccggtgtaaagtagttttacacttacgttcaatttgacagtttttttaaaaactgttttaactat |
11395163 |
T |
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| Q |
716 |
atgatgagtttagttactatacattgtcattgtacaacaattattttacactagtataat |
775 |
Q |
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| T |
11395162 |
atgatgagtttagttactatactttgtcattgtacaacaattattttacacgagtataat |
11395103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 12848659 - 12848610
Alignment:
| Q |
374 |
tgaagtgaacctggaataaacgtgaggaggagggaagacggagatggagg |
423 |
Q |
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| T |
12848659 |
tgaagtgaacctggaaaaaacgtgaggaggagggatgacggagatggagg |
12848610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 12848766 - 12848705
Alignment:
| Q |
366 |
gattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatggaggagag |
427 |
Q |
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| T |
12848766 |
gattgaagtgaagtgaacctggaaaaaacgtgaggagcaggaacgacggagatggaggagag |
12848705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 11921687 - 11921753
Alignment:
| Q |
366 |
gattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatggaggagagatcgg |
432 |
Q |
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| T |
11921687 |
gattgaagtgaagtgaacctggagaaaatgtgaggagcagggacgacggagatggaggagcgatcgg |
11921753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 12849054 - 12848990
Alignment:
| Q |
365 |
ggattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatggaggagagat |
429 |
Q |
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| T |
12849054 |
ggattgaagtgaagtgaacctggagaaaacgtgaggagcaggaacgacggagatggatgagagat |
12848990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 12849142 - 12849098
Alignment:
| Q |
188 |
ttcacatgattcgaacatagcgttacgcagaatatactaaactcg |
232 |
Q |
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| T |
12849142 |
ttcacatgattcgaacatagcgttatgcagaataagctaaactcg |
12849098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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