View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_60 (Length: 278)
Name: NF21284_low_60
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 31054707 - 31054463
Alignment:
| Q |
19 |
atattgatcattcacagcaaggagaatgcnnnnnnngcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagagg |
118 |
Q |
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| T |
31054707 |
atattgatcattcacagcaaggagaatgcaaaaaaagcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagagg |
31054608 |
T |
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| Q |
119 |
ctgcacaaattgcaagtcagaaacaccatgttttttagatctagtgatttaattttcaacaaaatgataaacctcattaatccaaaatgttgatgaacaa |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31054607 |
ctgcacaaattgcaagtcggaaacaccatgttttttagatctagtgatttaattttcaacaaaatgataaacctcattaatccaaaatgttgatgaacaa |
31054508 |
T |
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| Q |
219 |
aatgttttcaacacatatgcagaaaatccaaaggtggtgtctgtg |
263 |
Q |
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| T |
31054507 |
aatgttttcaacacatatgcagaaaatccaaaggtggtgtctgtg |
31054463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 31113497 - 31113372
Alignment:
| Q |
19 |
atattgatcattcacagcaaggagaatgcnnnnnnngcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagagg |
118 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
31113497 |
atattgatcattcacagcaaggagaatgcaaaagaagcaataatttattcatataataaacagattaatggctttgcagctatgcttgaagaggaagaag |
31113398 |
T |
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| Q |
119 |
ctgcacaaattgcaagtcagaaacac |
144 |
Q |
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| T |
31113397 |
ctgcacaaattgcaagtaagtaacac |
31113372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 31149902 - 31149814
Alignment:
| Q |
55 |
gcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagtcagaaaca |
143 |
Q |
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| T |
31149902 |
gcaataatttattcatataataaacagattaatggctttgcagctatacttgaagaggaagaagctgcacaacttgcaagtcagaaaca |
31149814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 31168194 - 31168106
Alignment:
| Q |
55 |
gcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagtcagaaaca |
143 |
Q |
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| T |
31168194 |
gcaataatttattcatataataaacagattaatggctttgcagctatacttgaagaggaagaagctgcacaacttgcaagtcagaaaca |
31168106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 31066215 - 31066129
Alignment:
| Q |
55 |
gcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagtcagaaa |
141 |
Q |
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| T |
31066215 |
gcaataatttattcttacaataaacagatcaatggctttgcagctatgcttgaagaggaagaagctgcacaacttgcaagtcagaaa |
31066129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 31197139 - 31197219
Alignment:
| Q |
55 |
gcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagt |
135 |
Q |
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||||| |||||||||||||| ||||| |||||||||||||| ||| |||||||||| ||||| |||||| | ||||||||| |
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| T |
31197139 |
gcaatcatttattcatataacaaacacatcaatggctttgctgctctacttgaagatgaagaagctgcagatattgcaagt |
31197219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 31066072 - 31066032
Alignment:
| Q |
223 |
ttttcaacacatatgcagaaaatccaaaggtggtgtctgtg |
263 |
Q |
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||||||| | |||||||||||| |||||||||||||||||| |
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| T |
31066072 |
ttttcaatatatatgcagaaaacccaaaggtggtgtctgtg |
31066032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 31113287 - 31113247
Alignment:
| Q |
223 |
ttttcaacacatatgcagaaaatccaaaggtggtgtctgtg |
263 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| |
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| T |
31113287 |
ttttcaacctatatgcagaaaatccaaaggtggtatctgtg |
31113247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 31149456 - 31149424
Alignment:
| Q |
231 |
acatatgcagaaaatccaaaggtggtgtctgtg |
263 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
31149456 |
acatatgcagaaaatccaaaggtggtatctgtg |
31149424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 31167748 - 31167716
Alignment:
| Q |
231 |
acatatgcagaaaatccaaaggtggtgtctgtg |
263 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
31167748 |
acatatgcagaaaatccaaaggtggtatctgtg |
31167716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 24265580 - 24265660
Alignment:
| Q |
55 |
gcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagt |
135 |
Q |
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|||||| |||| ||||| |||||||| |||||||| ||||| ||| ||||||||| ||||| || ||| ||||||||||| |
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| T |
24265580 |
gcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt |
24265660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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