View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_64 (Length: 269)
Name: NF21284_low_64
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 40381668 - 40381931
Alignment:
| Q |
1 |
ttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaat |
100 |
Q |
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| T |
40381668 |
ttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaat |
40381767 |
T |
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| Q |
101 |
ggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381768 |
ggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgt |
40381867 |
T |
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| Q |
201 |
tggtcaaacatcatttgcaacttccttccttgttcctctattcgcaactgtaattttctctgat |
264 |
Q |
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| T |
40381868 |
tggtcaaacatcatcttcaacttccttccttattcctctattcgcaactgtaattttctctgat |
40381931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 22812237 - 22812490
Alignment:
| Q |
1 |
ttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||| |
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| T |
22812237 |
ttgtaaaacaacaagactaatttaattcccattacaaaattgtat----ggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaat |
22812332 |
T |
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| Q |
101 |
ggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgt |
200 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||| ||| |
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| T |
22812333 |
ggtaacctcaatatctttaggactaattggtgtatcattgtttggtgtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgt |
22812432 |
T |
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| Q |
201 |
tggtcaaacatcatttgcaacttccttccttgttcctctattcgcaactgtaattttc |
258 |
Q |
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|||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
22812433 |
tggtcaaacatcatcttcaactgctttccttgttcctctattcgcaactgtaattttc |
22812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
89 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
188 |
Q |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
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| Q |
189 |
gtcttctgatgttggtcaaacat |
211 |
Q |
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||||||| |||||||||||||| |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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