View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_67 (Length: 261)
Name: NF21284_low_67
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 39441084 - 39440848
Alignment:
| Q |
10 |
aagaatatggcaccaagatttgccacttagaaatttcatgaattttccacccttgactcaacccaagcttcagattgggtagtcttccacatgctttact |
109 |
Q |
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| T |
39441084 |
aagaatatggcaccaagatttgccacttagaaatttcatgaattttccacccttgactcaacccaagcttcagattgggtagtcttccacatgctttact |
39440985 |
T |
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| Q |
110 |
tcctcctcagctgaatttgtagtttataatgtatcttgctctctacgagtttggaattggttttcccacagcttaccagacttcccaagtgagagaatca |
209 |
Q |
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| T |
39440984 |
tcctcctcagctgaatttgtagtttataatgtatcttgctctccacgagtttggaattggttttcccacagcttaccagacttcccaagtgagagaatca |
39440885 |
T |
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| Q |
210 |
gatcaagttgtttttgctgttgttcctgcacgaatgt |
246 |
Q |
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| T |
39440884 |
gatcaagttgtttttgctgttgttcctgcacgaatgt |
39440848 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 5964628 - 5964680
Alignment:
| Q |
10 |
aagaatatggcaccaagatttgccacttagaaatttcatgaattttccaccct |
62 |
Q |
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| T |
5964628 |
aagaatatgacaccaatatttgccacttagaaatttcatgaattttcctccct |
5964680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 37643718 - 37643676
Alignment:
| Q |
203 |
agaatcagatcaagttgtttttgctgttgttcctgcacgaatg |
245 |
Q |
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| T |
37643718 |
agaatgagatcaagttgtttttgctgttgttcctacatgaatg |
37643676 |
T |
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