View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_68 (Length: 256)

Name: NF21284_low_68
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_68
NF21284_low_68
[»] chr2 (1 HSPs)
chr2 (34-242)||(20039630-20039837)
[»] chr1 (1 HSPs)
chr1 (41-197)||(41134130-41134284)
[»] chr5 (1 HSPs)
chr5 (97-175)||(39087021-39087099)
[»] chr3 (1 HSPs)
chr3 (34-99)||(40820035-40820099)
[»] chr8 (1 HSPs)
chr8 (41-93)||(35885780-35885832)
[»] chr4 (1 HSPs)
chr4 (41-93)||(24472275-24472327)
[»] chr6 (1 HSPs)
chr6 (34-99)||(3336980-3337044)
[»] scaffold0136 (1 HSPs)
scaffold0136 (24-88)||(21771-21834)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 20039837 - 20039630
Alignment:
Q  34 tcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaacaagaggtttcaacaagcaagtttttgcactgat 133  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20039837 tcatttatttttaataaatttcaaacaagaggt-atatgtatctttgaaagtgaaactacgagaaacaagaggtttcaacaagcaagtttttgcactgat 20039739  T
Q  134 ttcgctttattcatgggttgttggaattgaatgttgatttttcctttgatttttattatgatttatggaggatgctaaattattaaatttgggtaaaccc 233  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20039738 ttcgctttattcatgagttgttggaattgaatgttgatttttcctttgatttttattatgatttatggaggatgctaaattattaaatttgggtaaaccc 20039639  T
Q  234 atgagttat 242  Q
    |||||||||    
T  20039638 atgagttat 20039630  T

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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 41134284 - 41134130
Alignment:
Q  41 tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaacaagaggtttcaacaagcaagtttttgcactgatttcgctt 140  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||||||| ||||    
T  41134284 tttttaatgaatttcaaacaagaggttatctgtgtctttgaaagtgaaactacaagaaacaaga-gtttcaacaa--aagtttttgcactgattttgctt 41134188  T
Q  141 t-attcatgggttgttggaattgaatgttgatttttcctttgatttttattatgattt 197  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  41134187 tgattcatgggttgctggaattgaatgttgatttttcctttgatttttatcatgattt 41134130  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 39087099 - 39087021
Alignment:
Q  97 aaacaagaggtttcaacaagcaagtttttgcactgatttcgcttt-attcatgggttgttggaattgaatgttgattttt 175  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||| |||||||||||||||||||||    
T  39087099 aaacaagaggtttcaacaagcaagtatttgcagtgatttcgttttgattcatgggttg-tggaattgaatgttgattttt 39087021  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 40820099 - 40820035
Alignment:
Q  34 tcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaa 99  Q
    ||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| ||||||||||    
T  40820099 tcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaagctacgagaaa 40820035  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 35885832 - 35885780
Alignment:
Q  41 tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactac 93  Q
    |||||||| |||||||||||||||||||| || |||||| |||||||||||||    
T  35885832 tttttaattaatttcaaacaagaggttatgtgcatctttaaaagtgaaactac 35885780  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 24472327 - 24472275
Alignment:
Q  41 tttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactac 93  Q
    |||||||| |||||||||||||||||||| || |||||| |||||||||||||    
T  24472327 tttttaattaatttcaaacaagaggttatgtgcatctttaaaagtgaaactac 24472275  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 3336980 - 3337044
Alignment:
Q  34 tcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaaactacgagaaa 99  Q
    ||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| |||| |||||    
T  3336980 tcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaagctacaagaaa 3337044  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 21834 - 21771
Alignment:
Q  24 ttcagtttcttcatttctttttaataaatttcaaacaagaggttatatgtatctttgaaagtgaa 88  Q
    ||||||||  ||||| ||||||||| |||||||||||| |||| || ||||||||||||||||||    
T  21834 ttcagtttaatcattgctttttaattaatttcaaacaaaaggtaat-tgtatctttgaaagtgaa 21771  T

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