View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_70 (Length: 250)
Name: NF21284_low_70
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 34776686 - 34776463
Alignment:
| Q |
19 |
ttaatttgttactagttactaccattttatccttattagcaaaagttatgtaacacagacacttcagattgaaggtaatgtatcctacacattttaatgt |
118 |
Q |
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| T |
34776686 |
ttaatttattactagttactaccattttatccttattagcaaaagttatgtagcagagacacttcggattgaaagtaatgtatcctacacattttaatgt |
34776587 |
T |
|
| Q |
119 |
ctaacattatctcaacatggacacatgttaataaattgaaacaatttcattgactaaatttaattctggtgtctgtgtcattgtcaatattgtatccggt |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34776586 |
ctaacattatctcaacacggacacatgttaataaattgaaacaatttcattgactaaatttaattctggtgtctgtgtcattgtcaatattgtgtccggt |
34776487 |
T |
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| Q |
219 |
gtgtgcagtgtcagtgtctgtgct |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
34776486 |
gtgtgcagtgtcagtgtctgtgct |
34776463 |
T |
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