View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_76 (Length: 245)
Name: NF21284_low_76
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40381603 - 40381376
Alignment:
| Q |
1 |
cacattataattggttaatttttaatgtttcacacagagagcttttgtatcagctctgtgcagggttgtcctttttacttgctccctctgcatttaagga |
100 |
Q |
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| T |
40381603 |
cacattataattgattaatttttaatgtttcaca--gagagcttttgtatcagctctgtgcagggttgtcctttttacttgctccctctgcattcaagga |
40381506 |
T |
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| Q |
101 |
aagatgaacctatattacttggtcatttcaattattctttagattccatcatccatgtaatttcaaaactatatttcttgttcttaattttcaattactt |
200 |
Q |
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| T |
40381505 |
aagatgaacctatattacttggtcatttcaattattctttaggttccatcatccatgtaatttcaaaactatatttcttgttcttaattttcaattactt |
40381406 |
T |
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| Q |
201 |
gcaaattagagagccacttcagtttcaact |
230 |
Q |
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| T |
40381405 |
gcaaattagagagccacttcagtttcaact |
40381376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 22810034 - 22809971
Alignment:
| Q |
167 |
aactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaact |
230 |
Q |
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| T |
22810034 |
aactatacttcttgttcttacttatcaattacttgcaaattagagagccacttcagcttcaact |
22809971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 22793913 - 22793867
Alignment:
| Q |
78 |
cttgctccctctgcatttaaggaaagatgaacctatattacttggtc |
124 |
Q |
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| T |
22793913 |
cttgctccctctacatttaaggatagatgaatccatattacttggtc |
22793867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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