View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_78 (Length: 241)
Name: NF21284_low_78
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_78 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 47075282 - 47075058
Alignment:
| Q |
17 |
atttattacattcttaaaactcatcttgctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaa |
116 |
Q |
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| T |
47075282 |
atttattacattcttaaaactcatcttgctttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaa |
47075183 |
T |
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| Q |
117 |
gactgaagttaaagacaacaatttaaatccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgca |
216 |
Q |
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| T |
47075182 |
gactgaagttaaagacaacaatttaaatccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgca |
47075083 |
T |
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| Q |
217 |
acatgtctgatgttacatcatattc |
241 |
Q |
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| T |
47075082 |
acatgtctgatgttacatcatattc |
47075058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 47057452 - 47057258
Alignment:
| Q |
46 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaac-aatttaaat |
144 |
Q |
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| T |
47057452 |
tttttcttgtaggatccttttctaaggatatcaagaatggttgagagtggaggttctgttcctatttgcaagactgaagttatagacaacaaatttaaat |
47057353 |
T |
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| Q |
145 |
ccaaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatat |
239 |
Q |
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| T |
47057352 |
ccaaaatggaaaccagtttgtcttaatttccagcagtttggaagtatagtaagcttgcgatctttgaacacaacatgtctaatgttaaatcatat |
47057258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 18230146 - 18230341
Alignment:
| Q |
46 |
tttttcttgtaggatccttttctaaggatatcaagaattgttgagagtggaggttctgttcctatttgcaagactgaagttaaagacaacaatttaaatc |
145 |
Q |
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||||||||| ||||||||||||||||||||||| || | |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
18230146 |
tttttcttgcaggatccttttctaaggatatcacgagtggttgagagtggaggaactgttcctattttcaagactgaagttatagacaacaatttaaatc |
18230245 |
T |
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| Q |
146 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttccatctttatttgcaacatgtctgatgttacatcatattc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||| ||||||| |
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| T |
18230246 |
caaaatggagaccactttgtcttaatttccagcagtttggaagtaaagtaagctttcgatctttgtgcacaacatgtccgatgttacaccatattc |
18230341 |
T |
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