View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_8 (Length: 638)
Name: NF21284_low_8
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 29632027 - 29631638
Alignment:
| Q |
20 |
atacgtttgtctaaaccacccacaaccaccgtaaggatgaggcggagcgaggacccaaggatccaaaactggtgagccagctgaaccgcaagctcgcggg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29632027 |
atacgtttgtctaaaccacccacaaccaccgtaaggatgaggcggagcgaggacccaaggatccaaaactggtgagccagctgaaccgcaagctcgcggg |
29631928 |
T |
|
| Q |
120 |
tgggcgtcagtacaagagcaaacacaccaaaaggagtctcaccgaggcgttgaagaataggaagcgcaaaagctgctgttttaccactaccagttttatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29631927 |
tgggcgtcagtacaagagcaaacacaccaaaaggagtctcaccgaggcgttgaagaataggaagcgcaaaagctgctgttttaccactaccagttttatc |
29631828 |
T |
|
| Q |
220 |
aattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgaggagattgcatcccgagtttatcgcaaccccgcaccatc |
319 |
Q |
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| T |
29631827 |
aattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgcggagattgcatcccgagtttatcgcaaccccgcaccatc |
29631728 |
T |
|
| Q |
320 |
cattccgagagtccgagatctgaaaacgacgtgtgtttgtcgtttccagcgttatcacagtccgttgtattgcaatagctagctgctgag |
409 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29631727 |
cattccgagagtcctagatctgaaaacgacatgtgtttgtcgtttccagcgttatcacagtccgttgtattacaatagctagctgctgag |
29631638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 445 - 622
Target Start/End: Complemental strand, 29631603 - 29631426
Alignment:
| Q |
445 |
gaagtaagctgttacggttgaccaggaaggaagaaagggaaaggagagagtgcgactcactggttatgggagaaatccatgtgcggctgccaggtttaga |
544 |
Q |
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| T |
29631603 |
gaagtaagctgttacggttgaccaggaaggaagaaagggaaaggagagagtgcgactcactggttatgggagaaatccatgtgcggctgccaggtttaga |
29631504 |
T |
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| Q |
545 |
atccatttcacagagttctacagtcggggactgaaaacaatgacaattttaaaattataaataaaaactgaacatagt |
622 |
Q |
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| T |
29631503 |
atccatttcacagagttctacagtcggggactgaaaacaatgacaattttaaaattataaataaaaactgaacatagt |
29631426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 36 - 345
Target Start/End: Complemental strand, 29630904 - 29630583
Alignment:
| Q |
36 |
cacccacaaccaccgtaaggatgaggcggagcgaggacccaaggatccaaaactggtgagccagctgaaccgcaagctcgcgggtgggcgtcagtacaag |
135 |
Q |
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| T |
29630904 |
cacccacaacaaccgtaaggctggggaggagcgaggacccaagggccaaaaactggtctgccagctgaatcgcaagctcgcgcgtgggcgtcagcacgag |
29630805 |
T |
|
| Q |
136 |
agcaaacaca------ccaaaaggagtc------tcaccgaggcgttgaagaataggaagcgcaaaagctgctgttttaccactaccagttttatcaatt |
223 |
Q |
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|||||||||| || ||||| || || |||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||| |
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| T |
29630804 |
agcaaacacatacacaccgaaaggtttcggatgctcggcgaggcgttgaagaatgggaagcgcaaaagctgccgttttaccactaccagtctcatcgatt |
29630705 |
T |
|
| Q |
224 |
ccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgaggagattgcatcccgagtttatcgcaaccccgcaccatccatt |
323 |
Q |
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|||| |||| |||||||||||||||||| |||||||||||| |||||||| |||| || | |||||||||||| || | |||| | ||||| |||||| |
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| T |
29630704 |
ccaaccacatcacggccttctagaaccttaggaatgcagtgttgttgcacgcgccgcggtgtttgcatcccgagcttcttgcaattctgcaccgtccatt |
29630605 |
T |
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| Q |
324 |
ccgagagtccgagatctgaaaa |
345 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
29630604 |
ccgagagtccgagatcggaaaa |
29630583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 28390248 - 28390281
Alignment:
| Q |
313 |
caccatccattccgagagtccgagatctgaaaac |
346 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
28390248 |
caccatccattctgagagtccgagatctgaaaac |
28390281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 95 - 299
Target Start/End: Original strand, 27663897 - 27664101
Alignment:
| Q |
95 |
gccagctgaaccgcaagctcgcgggtgggcgtcagtacaagagcaaacacaccaaaaggagtctcaccgaggcgttgaagaataggaagcgcaaaagctg |
194 |
Q |
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|||| ||||| |||||||||||| |||||||||| ||||| |||||||||||||| | | ||| | || || || ||||| ||||||||||| || | |
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| T |
27663897 |
gccaactgaaacgcaagctcgcgcgtgggcgtcaccacaagcgcaaacacaccaaacgtatgttcagcaagccgctgcagaatcggaagcgcaaatgccg |
27663996 |
T |
|
| Q |
195 |
ctgttttaccactaccagttttatcaattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgaggagattgcatccc |
294 |
Q |
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|||||||||| || ||||||| || ||||| |||||||||||||| |||||| || || ||||||||| | |||||| |||| |||| || ||| || |
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| T |
27663997 |
ctgttttaccgcttccagtttggtcgattccgattacatgacggccagctagaatctgagggatgcagtgttgctgcacgcgccgtggagttttcattcc |
27664096 |
T |
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| Q |
295 |
gagtt |
299 |
Q |
| |
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||||| |
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| T |
27664097 |
gagtt |
27664101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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