View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_81 (Length: 234)

Name: NF21284_low_81
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_81
NF21284_low_81
[»] chr6 (1 HSPs)
chr6 (1-222)||(23934736-23934955)
[»] chr3 (3 HSPs)
chr3 (1-168)||(44162946-44163112)
chr3 (1-168)||(44189066-44189232)
chr3 (3-149)||(6095242-6095391)
[»] chr2 (2 HSPs)
chr2 (1-168)||(32719210-32719376)
chr2 (1-120)||(32728195-32728314)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23934736 - 23934955
Alignment:
Q  1 cctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaacttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23934736 cctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaacttaa 23934835  T
Q  101 aaagaaaattcttttagaacattccccgttaaaacaatcaaagaaagtgaatagaacttgatgcatctcatatatatagtaataactcaatcaaaggacc 200  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  23934836 aaataaaattcttttagaacattcctcgttaaaacaatcaaagaaagtgaatagaacttgatgcatctc--atatatagtaataactcaatcaaaggacc 23934933  T
Q  201 attttttgttgaagtaaaaaat 222  Q
    ||||||||||||||||||||||    
T  23934934 attttttgttgaagtaaaaaat 23934955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44162946 - 44163112
Alignment:
Q  1 cctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaacttaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  44162946 cctgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttggagcacctttatcaacttaa 44163045  T
Q  101 aaagaaaattcttttagaacattccccgttaaaacaatcaaagaaagtgaatagaacttgatgcatct 168  Q
    |||||||||||| |||||||||| | | | |||||||||||||| || || |||||||||||||||||    
T  44163046 aaagaaaattctcttagaacatt-cgcataaaaacaatcaaagagagggattagaacttgatgcatct 44163112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44189066 - 44189232
Alignment:
Q  1 cctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaacttaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  44189066 cctgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttggagcacctttatcaacttaa 44189165  T
Q  101 aaagaaaattcttttagaacattccccgttaaaacaatcaaagaaagtgaatagaacttgatgcatct 168  Q
    |||||||||||| |||||||||| | | | |||||||||||||| || || |||||||||||||||||    
T  44189166 aaagaaaattctcttagaacatt-cgcataaaaacaatcaaagagagggattagaacttgatgcatct 44189232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 6095242 - 6095391
Alignment:
Q  3 tgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaac----tt 98  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||| ||||||||||||     ||    
T  6095242 tgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttggaacacctttatcaagctaatt 6095341  T
Q  99 aaaaagaaaattcttttagaacattccccgttaaaacaatcaaagaaagtg 149  Q
    |||||||||||||| | ||||||||  || | |||||||||||||| ||||    
T  6095342 aaaaagaaaattctctaagaacatt-accataaaaacaatcaaagagagtg 6095391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 32719210 - 32719376
Alignment:
Q  1 cctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaacttaa 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  32719210 cctgaagttcttgaagaggtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttggagcacctttatcaacttaa 32719309  T
Q  101 aaagaaaattcttttagaacattccccgttaaaacaatcaaagaaagtgaatagaacttgatgcatct 168  Q
    |||||||||||| |||||||||| | | | |||||||||||||| || || |||||||||||||||||    
T  32719310 aaagaaaattctcttagaacatt-cgcataaaaacaatcaaagagagggattagaacttgatgcatct 32719376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 32728195 - 32728314
Alignment:
Q  1 cctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttggagcacctttatcaacttaa 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  32728195 cctgaagttcttgaagaggtgaaccacatgttgtttcagcttgaggaataggatgatcgttatggggtttatgaattttggagcacctttatcaacttaa 32728294  T
Q  101 aaagaaaattcttttagaac 120  Q
    |||||||||||| |||||||    
T  32728295 aaagaaaattctcttagaac 32728314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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