View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_86 (Length: 230)
Name: NF21284_low_86
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 24641848 - 24642006
Alignment:
| Q |
47 |
agatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
146 |
Q |
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| T |
24641848 |
agatctgagaaaggattatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
24641947 |
T |
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| Q |
147 |
tgaaactgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtt |
205 |
Q |
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| T |
24641948 |
tgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggtt |
24642006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 24720734 - 24720867
Alignment:
| Q |
18 |
gaataagttaatgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatata |
117 |
Q |
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| T |
24720734 |
gaataagttaatgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatata |
24720833 |
T |
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| Q |
118 |
gtagctgacaagctcatatcagctgtggatgaaa |
151 |
Q |
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| T |
24720834 |
gtagctggcaagctcatatcagctgtggatgaaa |
24720867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 24693221 - 24693380
Alignment:
| Q |
51 |
ctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaa |
150 |
Q |
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| T |
24693221 |
ctgagagaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaa |
24693320 |
T |
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| Q |
151 |
actgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaat |
210 |
Q |
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| T |
24693321 |
actgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaat |
24693380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 24733406 - 24733293
Alignment:
| Q |
85 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
184 |
Q |
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| T |
24733406 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaacagca |
24733307 |
T |
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| Q |
185 |
acatagttggggat |
198 |
Q |
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| T |
24733306 |
acaaagttggggat |
24733293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 24648653 - 24648752
Alignment:
| Q |
85 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
184 |
Q |
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| T |
24648653 |
ccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagta |
24648752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 24656401 - 24656536
Alignment:
| Q |
64 |
atccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaac |
163 |
Q |
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| T |
24656401 |
atccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaa |
24656500 |
T |
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| Q |
164 |
ataaagatgtcaaaaacagtaacatagttggggata |
199 |
Q |
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| T |
24656501 |
atctagcagtcaaaaacagcaacataagtggggata |
24656536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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