View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_9 (Length: 562)

Name: NF21284_low_9
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_9
NF21284_low_9
[»] chr8 (16 HSPs)
chr8 (91-428)||(4802766-4803093)
chr8 (158-340)||(4848032-4848216)
chr8 (158-251)||(4792819-4792912)
chr8 (91-158)||(4847998-4848065)
chr8 (158-251)||(4690625-4690718)
chr8 (158-251)||(4727839-4727932)
chr8 (158-243)||(4872225-4872310)
chr8 (158-251)||(4738355-4738448)
chr8 (158-243)||(4888429-4888514)
chr8 (158-251)||(4827727-4827820)
chr8 (158-251)||(10448989-10449082)
chr8 (158-242)||(4751737-4751821)
chr8 (158-242)||(4921221-4921305)
chr8 (212-251)||(4682829-4682868)
chr8 (212-251)||(4705105-4705144)
chr8 (167-243)||(4774567-4774643)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 91 - 428
Target Start/End: Original strand, 4802766 - 4803093
Alignment:
Q  91 aaagagggcaaactacatgcagtatccaacatatacctttttgtcttttgaaaatgtgaaatccaagacctttttgtcttttgaatatgcgaaatccaag 190  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  4802766 aaagaggacaaactacatgttgtatccaacatatacctttttgtcttttggatatgtcaaatccaagacctttttgtcttttgaatatgcgaaatccaag 4802865  T
Q  191 agagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttcnnnnnnnngcatgaacccgtcatacaaagatcatgattg 290  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||    
T  4802866 agagatcaagatgattagaaataatgctgaaaatgatgcaacaagtggtacaacaatgttcttctttttgcacgaacccgtcatacaaagatcatgattg 4802965  T
Q  291 ccagccacactgnnnnnnngataaagttcttacaaacaactatacatacaatcatatcatatcatataatgcataaatttggttatgatgatagtagacc 390  Q
    ||||||||||||       || ||||||||||  ||||||||||||||||          |||||||||| | |||||||||||||||||||||||||||    
T  4802966 ccagccacactgaaacaaagacaaagttcttaagaacaactatacataca----------atcatataatacgtaaatttggttatgatgatagtagacc 4803055  T
Q  391 aatatgttatagtttgcttaaacctcttataaggaaaa 428  Q
     |||||| ||||||||||||||| ||||||| ||||||    
T  4803056 tatatgtcatagtttgcttaaacttcttatatggaaaa 4803093  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 158 - 340
Target Start/End: Original strand, 4848032 - 4848216
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagat---caagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttcnnn 254  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||  |||||||||||||||||||||||||||||||||||||||||||       
T  4848032 acctttttgtcttttgaatatgcgaaatccaagagagatgatcaagatgattagaaataatgctgaaaatgatgcaacaagtggtacaacaatgttcttc 4848131  T
Q  255 nnnnngcatgaacccgtcatacaaagatcatgattgccagccacactgnnnnnnngataaagttcttacaaacaactatacataca 340  Q
         ||||||||||||||||||||||||| |||| ||||||||||||       || ||||||||||| ||||||||||||||||    
T  4848132 tttttgcatgaacccgtcatacaaagatcaggatttccagccacactg-aaaaaagacaaagttcttacgaacaactatacataca 4848216  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 4792819 - 4792912
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    |||| |||||||||||||||| | |||||| ||||||||||| ||||||  || ||||||||||| ||||||||||| ||||||||||||||||    
T  4792819 acctatttgtcttttgaatatccaaaatccgagagagatcaatatgattataattaatgctgaaagtgatgcaacaattggtacaacaatgttc 4792912  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 4847998 - 4848065
Alignment:
Q  91 aaagagggcaaactacatgcagtatccaacatatacctttttgtcttttgaaaatgtgaaatccaaga 158  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  4847998 aaagaggacaaactacatgtagtatccaacatatacctttttgtcttttgaatatgcgaaatccaaga 4848065  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 4690718 - 4690625
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    |||||| |||||| | ||||| | || ||||||||| ||||||| ||||  || ||||||||||||||||||||||||||||||| ||||||||    
T  4690718 acctttctgtcttctcaatatccaaagtccaagagaaatcaagacgattacaactaatgctgaaaatgatgcaacaagtggtacagcaatgttc 4690625  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 4727932 - 4727839
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    ||||||||||||| ||||||| | |||||||||||| ||||| | ||||  || ||| ||||| || |||||||||||||||||||||||||||    
T  4727932 acctttttgtcttctgaatatccaaaatccaagagaaatcaaaaggattacaactaaagctgagaacgatgcaacaagtggtacaacaatgttc 4727839  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 4872225 - 4872310
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaa 243  Q
    ||||||||||||| ||||||| | |||||||||||| ||||| | ||||| || ||||| |||||||||||||| |||||||||||    
T  4872225 acctttttgtcttctgaatatccaaaatccaagagaaatcaaaaggattgcaattaatgttgaaaatgatgcaataagtggtacaa 4872310  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 4738448 - 4738355
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    ||||||||||||| ||||||| | |||||||| ||| || || ||||||  || |||||||||||| |||||||| |||||||||| |||||||    
T  4738448 acctttttgtcttctgaatatccaaaatccaaaagaaataaaaatgattacaactaatgctgaaaacgatgcaaccagtggtacaataatgttc 4738355  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 4888429 - 4888514
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaa 243  Q
    |||| |||||||| |||| || |||||||||||||| ||||||| ||||  ||  ||||||||||||||||||| |||||||||||    
T  4888429 acctgtttgtcttctgaacatccgaaatccaagagaaatcaagaggattacaataaatgctgaaaatgatgcaataagtggtacaa 4888514  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 4827727 - 4827820
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    ||||||||||||| ||||| | | |||| ||||||||||||||| ||||  || |||| |||||| |||| ||| || ||||||||||||||||    
T  4827727 acctttttgtcttctgaatctccaaaatgcaagagagatcaagaggattacaactaatcctgaaagtgatccaataattggtacaacaatgttc 4827820  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 10449082 - 10448989
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    ||||||||||||| |  |||| | |||||||||||| ||||| | ||||  || ||||| ||||||  ||| ||||||||||||||||||||||    
T  10449082 acctttttgtcttctatatatccaaaatccaagagaaatcaaaaggattacaattaatgttgaaaacaatgtaacaagtggtacaacaatgttc 10448989  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 4751821 - 4751737
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtaca 242  Q
    ||||||||||||| ||||||| | |||||||| ||| ||||| | ||||  || |||||||||||| |||||||| ||| |||||    
T  4751821 acctttttgtcttctgaatatccaaaatccaaaagaaatcaaaaggattacaactaatgctgaaaacgatgcaaccagttgtaca 4751737  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 4921221 - 4921305
Alignment:
Q  158 acctttttgtcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtaca 242  Q
    |||||| |||||| ||||||| | |||||||||||| ||||| | |||   || |||||| ||||||||||||| ||||||||||    
T  4921221 acctttctgtcttctgaatatccaaaatccaagagaaatcaataggataacaattaatgcagaaaatgatgcaataagtggtaca 4921305  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 4682868 - 4682829
Alignment:
Q  212 taatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  4682868 taatgctgaaaacgatgcaacaagtggtacagcaatgttc 4682829  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 4705144 - 4705105
Alignment:
Q  212 taatgctgaaaatgatgcaacaagtggtacaacaatgttc 251  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  4705144 taatgctgaaaaagatgcaacaagtggtactacaatgttc 4705105  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 4774567 - 4774643
Alignment:
Q  167 tcttttgaatatgcgaaatccaagagagatcaagatgattgaaaataatgctgaaaatgatgcaacaagtggtacaa 243  Q
    |||||||||||| | |||||||||||| ||||||| ||||  ||  | ||||||||| ||||| | |||||||||||    
T  4774567 tcttttgaatatccaaaatccaagagaaatcaagacgattacaatcattgctgaaaacgatgctataagtggtacaa 4774643  T

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