View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21285_high_1 (Length: 734)

Name: NF21285_high_1
Description: NF21285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21285_high_1
NF21285_high_1
[»] chr4 (1 HSPs)
chr4 (18-719)||(49034516-49035222)


Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 18 - 719
Target Start/End: Original strand, 49034516 - 49035222
Alignment:
Q  18 cgtggatggggaaagtgttgtgtgtctggttgctccaatattgaagtaaacgagtctagaaaggtaacctcctatattattgacaaattagtaaaagatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49034516 cgtggatggggaaagtgttgtgtgtctggttgctccaatattgaagtaaacgagtctagaaaggtaacctcctatattattgacaaattagtaaaagatc 49034615  T
Q  118 ttcttcatgttcaaataatccagtataataacatccatttatgatgataggtggttgtaattggggacaaggtaatatctgaaggagaatggatctcgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49034616 ttcttcatgttcaaataatccagtataataacatccatttatgatgataggtggttgtaattggggacaaggtaatatctgaaggagaatggatctcgtt 49034715  T
Q  218 gaatggatccacaggtgaggtgattctaggaaagcaaacactttctcctccggcattaagtgaggatttggaaactttcatgtcttgggctgatcaaata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49034716 gaatggatccacaggtgaggtgattctaggaaagcaaacactttctcctccggcattaagtgaggatttggaaactttcatgtcttgggctgatcaaata 49034815  T
Q  318 aggaagctgaaggtgagctgaatcaaaaca-ttcattcatgtttggtaatttcactcatatcattgttgtgtatcaggttttggcaaattgtgacacacc 416  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49034816 aggaagctgaaggtgagctgaatcaaaacatttcattcatgtttggtaatttcactcatatcattgttgtgtatcaggttttggcaaattgtgacacacc 49034915  T
Q  417 tgaagatgcaataac-agctagaagaaa--tggt-gcacaaggaattggactttgcaggactgaacacatggtacaaataatattcaactccttgttata 512  Q
    ||||||||||||||| ||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49034916 tgaagatgcaataacaagctagaagaaaataggtggcacaaggaattggactttgcaggactgaacacatggtacaaataatattcaactccttgttata 49035015  T
Q  513 actaactaaaacgtgtgagtgcattaaaatttaaaaggcttgtattgtagttttgttataacaagttttagcattgcttttcgaaatnnnnnnnnnnnnc 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  49035016 actaactaaaacgtgtgagtgcattaaaatttaaaaggcttgtattgtagttttgttataacaagttttagcattgcttttcgaaataaaaagaaaaaac 49035115  T
Q  613 actcatgtagagcgagcataagataaaaatgatcctttttgtatgctataagtttggtgtgttttagttttttgcttcagatgaaaggctaaaggctgtg 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49035116 actcatgtagagcgagcataagataaaaatgatcctttttgtatgctataagtttggtgtgttttagttttttgcttcagatgaaaggctaaaggctgtg 49035215  T
Q  713 agaagga 719  Q
    |||||||    
T  49035216 agaagga 49035222  T

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