View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21285_low_5 (Length: 418)
Name: NF21285_low_5
Description: NF21285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21285_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 42803029 - 42802632
Alignment:
| Q |
14 |
ataagttctgttaagaactttgtttacaccattgtctatgttttcaaatgtagtgttannnnnnngtgtgctttccatccatctagccaattttgctctg |
113 |
Q |
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| T |
42803029 |
ataagttctgttaagaactttgtttacaccattgtctatgttttcaaatgtagtgttatttttttgtgtgctttccatccatctagccaattttgctctg |
42802930 |
T |
|
| Q |
114 |
tcaaataaagcacctaccttgttgaaatgaaaaagaaagtttgatcttaggtaaaaagcgaacccttgcgttgcttaacttacatgagtatactagaatc |
213 |
Q |
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| T |
42802929 |
tcaacgaaagcac-taccttgttgaaatgaaaaagaaagtttgattttaggtaaaaagcgaacccttgcgttgcttaacttacatgggtatactagaatc |
42802831 |
T |
|
| Q |
214 |
acggtgactcattttaattgattttgcagaagttataagtgtattttttgaaaaatcacgagggagcaccatgattgcgacacgccatagtgataccaaa |
313 |
Q |
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| T |
42802830 |
acggtgactcattttaattgattttgcagaagttataagtgtatttttcgaaaaatcacgatggatcaccataattgtgacacgccatagtgataccaaa |
42802731 |
T |
|
| Q |
314 |
cttacactcaagagaatctcttaaaaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaactgaaaagatacattttcttc |
412 |
Q |
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| T |
42802730 |
cctacactcaagagaatctcttaaaaggaggggaaaatatagaattttcattttgattcttagattacattgttgaaactgaaaagatacatattcttc |
42802632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 25514494 - 25514880
Alignment:
| Q |
20 |
tctgttaagaactttgtttacaccattgtctatgttttcaaatgtagtgttannnnnnngt----gtgctttccatccatctagccaattttgctctgtc |
115 |
Q |
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|||||||||||||||| ||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||| |
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| T |
25514494 |
tctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgttatttttatttttttgtgctttccatccatctagccacttttgctctgtc |
25514593 |
T |
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| Q |
116 |
aaataaagcacctaccttgttgaaatgaaaaagaaagtttgatcttaggtaaaaagcgaacccttgcgttgcttaacttacatgagtatactagaatcac |
215 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |
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| T |
25514594 |
aaagaaagcacctaccttgctgaaatgaaaaagaaagtttgcttttaggtaaaaagctaacccttgcgttgcttaacttacatgggtatgctagaatcac |
25514693 |
T |
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| Q |
216 |
ggtgactcattttaattgattttgcagaagttataagtgtattttttgaaaaatcacgagggagcaccatgattgcgacacgccatagtgataccaa--- |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||| |
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| T |
25514694 |
ggtgactcattttaattgattttgcagaagttataagtgtattttttgaaaaatcacgatggatcaccatgattgtgacacaccacagtgataccatgca |
25514793 |
T |
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| Q |
313 |
-acttacactcaagagaatctcttaaaaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaactgaaaa |
398 |
Q |
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| T |
25514794 |
tacatacacttaagagaatctcttaaaaggaggggaaaatatagaattttcattttgattcttagattacattcttgaaactgaaaa |
25514880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 25520881 - 25520494
Alignment:
| Q |
20 |
tctgttaagaactttgtttacaccattgtctatgttttcaaatgtagtgttannnnnnngt----gtgctttccatccatctagccaattttgctctgtc |
115 |
Q |
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|||||||||||||||| ||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||| || | |
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| T |
25520881 |
tctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgttatttttattttttggtgctttccatccatctagccacttttgctatgcc |
25520782 |
T |
|
| Q |
116 |
aaataaagcacctaccttgttgaaatgaaaaagaaagtttgatcttaggtaaaaagcgaacccttgcgttgcttaacttacatgagtatactagaatcac |
215 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
25520781 |
aaagaaagcacctaccttgatgaaatgaaaaagaaagtttgcttttaggtaaaaagcgaacccttgcgttgcttaacttacatgggtatgctagaatcac |
25520682 |
T |
|
| Q |
216 |
ggtgactcattttaattgattttgcagaagttataagtgtatt-ttttgaaaaatcacgagggagcaccatgattgcgacacgccatagtgatac----c |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||| ||| |||||||| | |
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| T |
25520681 |
ggtgactcattttaattgattttgcagaagttataagtgtatttttttgaaaaatcacgatggatcaccatgattgtgacacaccacagtgataccatgc |
25520582 |
T |
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| Q |
311 |
aaacttacactcaagagaatctcttaaaaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaactgaaaa |
398 |
Q |
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| || || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
25520581 |
atacatatacttaagagaatctcttaaaaggagggaaaaatatagaattttcattttgattcttagattacattcttgaaactgaaaa |
25520494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 49470 - 49316
Alignment:
| Q |
84 |
ctttccatccatctagccaattttgctctgtcaaataaagcacctaccttgttgaaatgaaaaagaaagtttgatcttaggtaaaaagcgaacccttgcg |
183 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||| | |
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| T |
49470 |
ctttccatccatctagccacttttgctctgtcaaagaaagcacctaccttgttgaaatgaaaaagaaagtttgcttttaggtaaaaagagaatcctttgg |
49371 |
T |
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| Q |
184 |
ttgcttaacttacatgagtatactagaatcacggtgactcattttaattgatttt |
238 |
Q |
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|||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
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| T |
49370 |
ttgcttaacttacatggatatgttagaatcacagtgactcattttaattgatttt |
49316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 49267 - 49212
Alignment:
| Q |
336 |
aaaaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaa |
391 |
Q |
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|||||||| | |||||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
49267 |
aaaaggagcggaaaataaagaattttcatttggattcttagattacattgttgaaa |
49212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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