View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21285_low_6 (Length: 407)
Name: NF21285_low_6
Description: NF21285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21285_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 40078824 - 40078541
Alignment:
| Q |
13 |
aaaattaaaggattggtttattcacttgtctattcatcacttttttcacttgttgttttgcctttactagattaaaaaatataattggtttgtgaaagaa |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40078824 |
aaaattaaaggattggtttatttacttgtctattcatcacttttttcacttgttgttttgcctttactagattaaaaaatataattggtttgtgaaagaa |
40078725 |
T |
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| Q |
113 |
agtaagaaagaagacgggnnnnnnntaggagattgttgtttaataagagataaatagaaagnnnnnnnntacgagagaaaataaagaagtatatttatgt |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40078724 |
agtaagaaagaagacgggaaaaaaataggagattgttgtttaataagagataaatagaaagaaaaaaaatacgagagaaaataaagaagtatatttatgt |
40078625 |
T |
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| Q |
213 |
gaattcatacttgcatgttttttaaaatgtgaattcattcactatattttgtgtttggaactttcaaaatttacatgagtgaat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
40078624 |
gaattcatacttgcatgttttttaaaatgtgaattcattcactacattttgtgtttggaactttaaaaatttacatgagtgaat |
40078541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 40080394 - 40080284
Alignment:
| Q |
13 |
aaaattaaaggattggtttattcacttgtctattcatcacttttttcacttgttgttttgcctttactagattaaaaaatataattggtttgtgaaagaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40080394 |
aaaattaaaggattggtttattcacttgtctattcatcacttttttcaattgttgttttgcctttactagatta-aaaatataattggtttgtgaaagaa |
40080296 |
T |
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| Q |
113 |
agtaagaaagaa |
124 |
Q |
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|||||||||||| |
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| T |
40080295 |
agtaagaaagaa |
40080284 |
T |
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