View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21286_low_1 (Length: 412)
Name: NF21286_low_1
Description: NF21286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21286_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 40087601 - 40087991
Alignment:
| Q |
6 |
atttgttagtccaaagtaagtaggatgtaataaaaataannnnnnnnatgccagattaattctgcatctacaatttcaaacttcgtaactgaatctttaa |
105 |
Q |
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| T |
40087601 |
atttgttagtccaaagtaagtaggatgtaataaaagtaaatttttttatgccagattaattctgcatctacaatttcaaacttcgtaactgaatctttaa |
40087700 |
T |
|
| Q |
106 |
aagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtctaagactggatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40087701 |
aagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtcaaagactggatt |
40087800 |
T |
|
| Q |
206 |
acttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactgat |
305 |
Q |
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| T |
40087801 |
acttgagcaaataaatatcacagctgatagaagtgactacttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactgat |
40087900 |
T |
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| Q |
306 |
gattctgtacttctcgataacacttctattgtattcttttgaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattg |
396 |
Q |
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| T |
40087901 |
gattctgtacttctcgataacacttctattgtattcttttgaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattg |
40087991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 40061752 - 40062144
Alignment:
| Q |
6 |
atttgttagtccaaagtaagtaggatgtaataaaaataannnnnnnn--atgccagattaattctgcatctacaatttcaaacttcgtaactgaatcttt |
103 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
40061752 |
atttattagtccaaagtaagtagaatgtaataaaaataacatgtttattatggcagattaattctgcatctgcaatttcaaacttcgtaactaaatcttc |
40061851 |
T |
|
| Q |
104 |
aaaagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtctaagactgga |
203 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
40061852 |
aaaagaagatatcagttctttagaaacttctagttcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattttcaaaaactgga |
40061951 |
T |
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| Q |
204 |
ttacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactg |
303 |
Q |
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| T |
40061952 |
ttacttgagcaaataaatatcaccgctgatagaagtgactacttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgaacg |
40062051 |
T |
|
| Q |
304 |
atgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattg |
396 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
40062052 |
atgattctgtacttctcgataacacttctattatattcttttgaagcgttgatcttaaggatgatcttggttctcaaactgtacttcacattg |
40062144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 40079900 - 40080278
Alignment:
| Q |
6 |
atttgttagtccaaagtaagtaggatgtaataaaaataannnnnnnn-atgccagattaattctgcatctacaatttcaaacttcgtaactgaatcttta |
104 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||||||||| |
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| T |
40079900 |
atttgttagtccaaggtaagtaggatgtaataaaaatatcatttttttatggcagattaattctgcatctgcgatttcaaacttcgtaactgaa------ |
40079993 |
T |
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| Q |
105 |
aaagaagatatcagttcttcagaaacttctagatcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtctaagactggat |
204 |
Q |
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| T |
40079994 |
------gatatcagttctttagaaacttctagttcaaaatggagttggataaacgaacctgtgggtatttcgaaggatgatatattgtctaagactggat |
40080087 |
T |
|
| Q |
205 |
tacttgagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactga |
304 |
Q |
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|||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| | |||| || |
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| T |
40080088 |
tacttgagcaaataaataccacagctgatagaagtgattatttgtggtactcattaaggtacacaagcctccaaatttgaaagatatttgctttgaccga |
40080187 |
T |
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| Q |
305 |
tgattctgtacttctcgataacacttctattgtattcttttgaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattg |
396 |
Q |
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||||| ||||||||| |||||||||||| ||||||| |||| |||| |||||||| ||||||||| ||||||||||||||||| ||||||| |
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| T |
40080188 |
tgattatgtacttcttgataacacttctcttgtatt-ttttaaagccttgatcttgcggatgatcccggttctcaaactgtcctgcacattg |
40080278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 22013690 - 22013633
Alignment:
| Q |
210 |
gagcaaataaacatcacagctgatagaagtgactacttgtggtactcattaaggtata |
267 |
Q |
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||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
22013690 |
gagcaaataaacacgacggctgatagaagtgactacttatggtactcattaaggtata |
22013633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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