View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21286_low_2 (Length: 406)
Name: NF21286_low_2
Description: NF21286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21286_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 45960868 - 45961273
Alignment:
| Q |
1 |
ccttttgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctatttgcgtgattttgtaatccatgttgtaaacatgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45960868 |
ccttttgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctatttgtgtgattttgtaatccatgttgtaaacatgaaat |
45960967 |
T |
|
| Q |
101 |
catttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttgcgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45960968 |
catttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttgcgaag |
45961067 |
T |
|
| Q |
201 |
ttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961068 |
ttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttc |
45961167 |
T |
|
| Q |
301 |
caaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagataaactttggtgtataagcat |
400 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961168 |
caaaatgcatgaaagtagctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagataaactttggtgtataagcat |
45961267 |
T |
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| Q |
401 |
cttcat |
406 |
Q |
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|||||| |
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| T |
45961268 |
cttcat |
45961273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 142803 - 142399
Alignment:
| Q |
6 |
tgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatctatttgcgtgattttgtaa-tccatgttgt---aaacatgaaatc |
101 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||| |||||| ||| |||||||||||| |
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| T |
142803 |
tgtgtaattcctccaaaacaaacatgggaatttgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccatgatgttttaaacatgaaatc |
142704 |
T |
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| Q |
102 |
atttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttgcgaagt |
201 |
Q |
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||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |
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| T |
142703 |
attttcctgttcagattctttaacttttctcaaaaaaagttccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccgtacaaagt |
142604 |
T |
|
| Q |
202 |
tcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttcc |
301 |
Q |
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|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
142603 |
tcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttcc |
142504 |
T |
|
| Q |
302 |
aaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagataaactttggtgtataagcatc |
401 |
Q |
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||||||||| ||| ||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142503 |
aaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtgaaaaggacctattgagataaactttggtgtataagcatc |
142404 |
T |
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| Q |
402 |
ttcat |
406 |
Q |
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||||| |
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| T |
142403 |
ttcat |
142399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 83 - 286
Target Start/End: Complemental strand, 297928 - 297724
Alignment:
| Q |
83 |
atgttgtaaacatgaaatcatttttctgttcagattctttagcttttctcaaaaa-caactccattatgaaaactgagtctaacaaaatcatttccaaaa |
181 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
297928 |
atgttgtaaacatgaaatcatctttctgttcagattctttagcttttctcaaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaa |
297829 |
T |
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| Q |
182 |
acttctcatccttgcgaagttcttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctaccaaagctaaagtttg |
281 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
297828 |
gcttctcatccttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtaccaaagctaaagtttg |
297729 |
T |
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| Q |
282 |
tttat |
286 |
Q |
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||||| |
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| T |
297728 |
tttat |
297724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 292693 - 292572
Alignment:
| Q |
281 |
gtttatttgacaaacgtttccaaaatgcattaaagtacctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagat |
380 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||| |
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| T |
292693 |
gtttatttgacaaatgtttccaaaatg----aaagtacttttgtttctgtttctcttgatttagttcagggttatgactgtgaagaggacctattgagat |
292598 |
T |
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| Q |
381 |
aaactttggtgtataagcatcttcat |
406 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
292597 |
aaactttggtgtgtaagcatcttcat |
292572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 298194 - 298134
Alignment:
| Q |
1 |
ccttttgtgtaattcctccaaaacaaacataggaatttgattttcaagcagcaacaaatct |
61 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
298194 |
ccttttgtgtaattcctccaaaacaaacataagaatttgattttcaagcagcaagaaatct |
298134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 335
Target Start/End: Original strand, 27123703 - 27123928
Alignment:
| Q |
104 |
ttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttgcgaagttc |
203 |
Q |
| |
|
||||||||||||||| || |||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||| || || | | || ||| |
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| T |
27123703 |
ttttctgttcagatttatttgcttttctcaaaaataaatccatgatgaaaactgagtctaacaaaatatattccacaaactgatccaccatccaaacttc |
27123802 |
T |
|
| Q |
204 |
ttgtttggaataacaattaccaatattttctctgttttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaaacgtttccaa |
303 |
Q |
| |
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| | ||||||||||| |||| |||||||| ||||||| |||||| |||||||||||| | ||||||| ||||||||||| |||| ||||||| |
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| T |
27123803 |
tggcttggaataacagttacttatattttcactgttttattcaaggaaagctttatatcgtcccaaagc------ctgtttatttgataaacatttccaa |
27123896 |
T |
|
| Q |
304 |
aatgcattaaagtacctttgtttttgtttctc |
335 |
Q |
| |
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|||| || ||||||| ||||||| |||||||| |
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| T |
27123897 |
aatgaatgaaagtacttttgtttgtgtttctc |
27123928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27123596 - 27123656
Alignment:
| Q |
1 |
ccttttgtgtaattcctccaaaacaaacataggaatttga-ttttcaagcagcaacaaatc |
60 |
Q |
| |
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||||||||||||||| || || ||||||||||||| ||| |||||||||||||||||||| |
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| T |
27123596 |
ccttttgtgtaattcatctaatacaaacataggaagctgatttttcaagcagcaacaaatc |
27123656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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