View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21286_low_3 (Length: 321)
Name: NF21286_low_3
Description: NF21286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21286_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 37559257 - 37558957
Alignment:
| Q |
5 |
gtagcaaaggggtacatgtaaaatcaaggcaggaagatttatagcatcgagttgactttatttcaaagtgttttaataacttgtcaacaacttaaaat-- |
102 |
Q |
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| T |
37559257 |
gtagcaaaagggtacatgtaaaatcaaggcaggaagatttatagcattgagttgactttatttcaaagtgttttaataacttgtcaacaacttaaaaatc |
37559158 |
T |
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| Q |
103 |
-----aaaaatctttcaaataaataatcatacactactttttcttctcaaaattaagaaagtggtcctaaaggagtcccaatgatcattgatgctatttg |
197 |
Q |
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| T |
37559157 |
tttcaaaaagtctttcaaataaataatcatacactactttttcttctcaaaattaagaaagtggtcctaaaggagtcccattgatcattgatgctatttg |
37559058 |
T |
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| Q |
198 |
tagttcaacagaaaggtagattttctcaaaaggaatttggtaaccatgccaaattgccaacaaacttttgcattataacacaaacttttatagtttatat |
297 |
Q |
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| T |
37559057 |
tagttcaacagaaaggtagattttctcaaaaggaatttggtaaccatgccaaattgccaacaagcttttgcattataacacaaacttttatagtttatat |
37558958 |
T |
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| Q |
298 |
a |
298 |
Q |
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| T |
37558957 |
a |
37558957 |
T |
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Back To:
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 4444440 - 4444506
Alignment:
| Q |
226 |
aaaggaatttggtaaccatgccaaattgccaacaaacttttgcattataacacaaacttttatagtt |
292 |
Q |
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| T |
4444440 |
aaaggaatttggtattcatgccaaattgccaacaaacttttgcattataaaacaaacctttatagtt |
4444506 |
T |
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