View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21286_low_4 (Length: 264)
Name: NF21286_low_4
Description: NF21286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21286_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 45960614 - 45960857
Alignment:
| Q |
16 |
cttagtgcatattctgatctaaaaggtgtaaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcag |
115 |
Q |
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| T |
45960614 |
cttagtgcatattctgatctaaaaggtgtgaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcag |
45960713 |
T |
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| Q |
116 |
tgaagtgtttgcaagatttgcaattttgagtcaactccaattttttacttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaa |
215 |
Q |
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| T |
45960714 |
cgaagtgtttgcaagatttgcaattttgagtcaactccaattttttacttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaa |
45960813 |
T |
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| Q |
216 |
actaacacaattttccttattgctattgcaaccattcttctcac |
259 |
Q |
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| T |
45960814 |
actaaggcaattttccttattgctattgcaaccattcttttcac |
45960857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 28733552 - 28733468
Alignment:
| Q |
145 |
gtcaactccaattttttacttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaaactaacacaatttt |
229 |
Q |
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| T |
28733552 |
gtcatctccattttttggcttaacttatgaggatggtaatcttcaaagtagttaaagccaagctcaatagaaccaacacattttt |
28733468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 298440 - 298205
Alignment:
| Q |
24 |
atattctgatctaaaaggtgtaaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcagtgaagtgt |
123 |
Q |
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| T |
298440 |
atattctgatcaaaaaggtgtgatactttgtgatggactcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcaatgaagtgt |
298341 |
T |
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| Q |
124 |
ttgcaagatttgcaattttgagtcaactccaattttttacttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaaactaacac |
223 |
Q |
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| T |
298340 |
ttgcaagatttgcaatttggagtcaactccaagtttttacttaacttttgaggataataaacttcaaagtagttaaaagcaagatcaataaaactaacac |
298241 |
T |
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| Q |
224 |
aattttccttattgctattgcaaccattcttctcac |
259 |
Q |
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| T |
298240 |
aattttccttattgctattgaaaccattcttttcac |
298205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 143065 - 142827
Alignment:
| Q |
16 |
cttagtgcatattctgatctaaaaggtgtaaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcag |
115 |
Q |
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| T |
143065 |
cttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcag |
142966 |
T |
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| Q |
116 |
tgaagtgtttgcaagatttgcaattttgagtcaactccaattttttac---ttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaat |
212 |
Q |
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| T |
142965 |
tgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaat |
142866 |
T |
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| Q |
213 |
aaaactaacacaattttccttattgctattgcaaccatt |
251 |
Q |
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| T |
142865 |
aaaactaacacaattttccttattgctattgcaaccatt |
142827 |
T |
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