View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21286_low_6 (Length: 224)
Name: NF21286_low_6
Description: NF21286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21286_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 48387871 - 48387657
Alignment:
| Q |
1 |
tttagcattgtttcatcaatctgggtcaatatatctaagttaggttgatttagaagctcctgtgtgctaatgtaacatgatagatttgtttctactctga |
100 |
Q |
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| T |
48387871 |
tttagcattgtttcatcaatctgggtcaatatatctaagttaggttgatttagaagctcctgtgtgctaatgtaacatgatagatttgtttctactctga |
48387772 |
T |
|
| Q |
101 |
atttcctcaataagaattaagctttatagttcattgtggtttttaacagacaatctatgaggtctttctttagggtgctacttttctcccgacctcgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48387771 |
atttcctcaataagaattaagctttatagttcattgtgatttttaacagacaatctatgaggtctttctttagggtgctacttttctcccgaccttgtaa |
48387672 |
T |
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| Q |
201 |
ctaaaattccctatg |
215 |
Q |
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||||||||||||||| |
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| T |
48387671 |
ctaaaattccctatg |
48387657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 10131352 - 10131384
Alignment:
| Q |
183 |
tttctcccgacctcgtaactaaaattccctatg |
215 |
Q |
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| T |
10131352 |
tttctcccgacctcgtaactaaaattccctatg |
10131384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 9995679 - 9995714
Alignment:
| Q |
183 |
tttctcccgacctcgtaactaaaattccctatgctt |
218 |
Q |
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| T |
9995679 |
tttctcccgacctcgtaactaaaatttcctatgctt |
9995714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 10358870 - 10358835
Alignment:
| Q |
183 |
tttctcccgacctcgtaactaaaattccctatgctt |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
10358870 |
tttctcccgacctcgtaactaaaattccatatgctt |
10358835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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