View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_high_11 (Length: 335)
Name: NF21287_high_11
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 27 - 319
Target Start/End: Original strand, 43174705 - 43174997
Alignment:
| Q |
27 |
caagtatgttctatttcaagttttacttttacatattttattacttcattttccatgcgatgagttagtgatttatctcatatttatatttcaaaaattt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43174705 |
caagtatgttctatttcaagttttacttttacatattttatgacttcattttccatgtgatgagttagtgatttatcttatatttatatttcaaaaattt |
43174804 |
T |
|
| Q |
127 |
acggtgtctgacaatgtcaaataaataacatgattatgtattactgtatgtgcaagttttggtagaaatccaaatctttgcacctcaggttcatgcaaca |
226 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43174805 |
atggtgtctgacaatgtcaaataaataacatgattatgtattactgtatgtgcaagttttggtagaaatccaaatctttgcacctcaggttcatgcaaca |
43174904 |
T |
|
| Q |
227 |
agaggaacaggaacaaggttttagttccattagtaacatcactcggtggagctttcattacactagcagtagcaatgatttcttttcgtatat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43174905 |
agaggaacaggaacaaggttttagttccattagtaacatcactcggtggagctttcattacactagcagtagcaatgatttcttttcgtatat |
43174997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 71 - 313
Target Start/End: Original strand, 43165608 - 43165850
Alignment:
| Q |
71 |
ttcattttccatgcgatgagttagtgatttatctcatatttatatttcaaaaatttacggtgtctgacaatgtcaaataaataacatgattatgtattac |
170 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||| || | || |||||| | ||||||||||||||||| | |||||| |
|
|
| T |
43165608 |
ttcattttccatgtcatgagctagtgatttatatcataattatattacaaaaatgtaaaatatcagacaatataaaataaataacatgattttttattac |
43165707 |
T |
|
| Q |
171 |
tgtatgtgcaagttttggtagaaatccaaatctttgcacctcaggttcatgcaacaagaggaacaggaacaaggttttagttccattagtaacatcactc |
270 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||| |||||||||||||||| || || || |||| |||||| |||||||||| ||||||||| | |
|
|
| T |
43165708 |
tgtaaatgcaagttttggtggaaatccagatctttgctcctcaggttcatgcaataaaagtaatgggaataaggttgtagttccattggtaacatcaatt |
43165807 |
T |
|
| Q |
271 |
ggtggagctttcattacactagcagtagcaatgatttcttttc |
313 |
Q |
| |
|
|||||||||||| | | ||||||||||||| |||||||||||| |
|
|
| T |
43165808 |
ggtggagctttcttgatactagcagtagcagtgatttcttttc |
43165850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 71 - 314
Target Start/End: Complemental strand, 43222119 - 43221876
Alignment:
| Q |
71 |
ttcattttccatgcgatgagttagtgatttatctcatatttatatttcaaaaatttacggtgtctgacaatgtcaaataaataacatgattatgtattac |
170 |
Q |
| |
|
||||||| ||||| ||||| |||||||||| ||||| ||||||| ||||||| || ||| || |||||| |||||||||||||| | |||| | |||| |
|
|
| T |
43222119 |
ttcatttgccatgtcatgagcaagtgatttatatcataattatattacaaaaatgtaaggtatcagacaatatcaaataaataacacggttatttgttac |
43222020 |
T |
|
| Q |
171 |
tgtatgtgcaagttttggtagaaatccaaatctttgcacctcaggttcatgcaacaagaggaacaggaacaaggttttagttccattagtaacatcactc |
270 |
Q |
| |
|
|||| ||||||||||||| |||||| | |||||||| ||||||||||||||||||| ||||| |||| |||||| |||||||||| ||||||||| | |
|
|
| T |
43222019 |
tgtaaatgcaagttttggtggaaatcaagatctttgctcctcaggttcatgcaacaaaaggaatgggaataaggttgtagttccattggtaacatcaatt |
43221920 |
T |
|
| Q |
271 |
ggtggagctttcattacactagcagtagcaatgatttcttttcg |
314 |
Q |
| |
|
|||||||||||| | | | ||||||||||| |||||||||||| |
|
|
| T |
43221919 |
ggtggagctttcctgatattagcagtagcagcgatttcttttcg |
43221876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University