View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21287_high_12 (Length: 321)

Name: NF21287_high_12
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21287_high_12
NF21287_high_12
[»] chr5 (1 HSPs)
chr5 (18-310)||(3983549-3983839)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 3983549 - 3983839
Alignment:
Q  18 catttctatgatcccattgtgatcatcgttcctccaaacaagtcagcctccagttctacaagtacagttactgaattggttgatagattttatggttcag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3983549 catttctatgatcccattgtgatcatcgttcctccaaacaagtcagcctccagttctacaagtacagttactgaattggttgatagattttatggttcag 3983648  T
Q  118 tcaagaaggtaatatgatcatgtctctttgtccttacatccttctaatggttatgtttttcagtgcaaaactgctgtgcatgatgtctgtctatgaaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3983649 tcaagaaggtaatatgatcatgtctctttgtccttacatccttctaatggttatgtttttcagtgcaaaactgctgtgcatgatgtctg--tatgaaata 3983746  T
Q  218 catttcatttggagttcttttatatgcaggtagtgttggcccgtggttgttttgatgacacaaaggttttagcacatactttttatctttcat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3983747 catttcatttggagttcttttatatgcaggtagtgttggcccgtggttgttttgatgacacaaaggttttagcacatactttttatctttcat 3983839  T

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