View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_high_15 (Length: 280)
Name: NF21287_high_15
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 33345332 - 33345062
Alignment:
| Q |
1 |
tgttgaaattcaccaaaaaacaagttgaaaaacttaagaacaaagccaataacaatgaaaacaaggtacgaggttatactagttttgaggttattagtgg |
100 |
Q |
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| T |
33345332 |
tgttgaaattcaccaaaaaacaagttgaaaaacttaagaacaaagccaataacaatgaaaacaaggtacgaggttatactagttttgaggttattagtgg |
33345233 |
T |
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| Q |
101 |
ttacttatggaggtgtgttagtaaagtgcgttttgaaggaaattggaaccaaccaacaaggttaacaactttggttaattgtagaaataggttgaatcca |
200 |
Q |
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| T |
33345232 |
ttacttatggaggtgtgttagtaaagtgcgttttgaaggaaattggaaccaaccaacaaggttaacaactttggttaattgtagaaataggttgaatcca |
33345133 |
T |
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| Q |
201 |
cttttgcctaagaattattttgggaatgcaacttttcctacagtgacacaaacttgttcatttgatgatgt |
271 |
Q |
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| T |
33345132 |
cctttgcctatgaattattttgggaatgcaacttttcctacagtgacacaaacttgttcatttgatgatgt |
33345062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 58 - 271
Target Start/End: Complemental strand, 33333659 - 33333442
Alignment:
| Q |
58 |
aaaacaaggtacgaggttatactagttttgaggttattagtggttacttatggaggtgtgttagtaaagtgcgttttgaaggaaattggaaccaaccaac |
157 |
Q |
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| T |
33333659 |
aaaacaaggtacgaggtaatactagttttgaggttattagtggttacatatggaggtgtgtttgtaaagtgcgtgttgaaggaaattggaaccaaccaac |
33333560 |
T |
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| Q |
158 |
aaggttaacaactttggttaattgtagaaataggttgaatccacttttgcctaagaattattttgggaatgcaacttttcctaca----gtgacacaaac |
253 |
Q |
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| T |
33333559 |
aaggttaacaactttggttaattgtagaaacaggttgaatccacctcttcccaagaactattttggatatgcaacatttcctacgtacggtgacacaaaa |
33333460 |
T |
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| Q |
254 |
ttgttcatttgatgatgt |
271 |
Q |
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| T |
33333459 |
ttgttcatttgatgatgt |
33333442 |
T |
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