View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_high_17 (Length: 267)
Name: NF21287_high_17
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 9453283 - 9453035
Alignment:
| Q |
1 |
ttactactttctgttgtaactgcattagtgacttatattcctttgttatgctttcctgaatatactgatagtactataagtatctcatttgggaaaagga |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9453283 |
ttactactttatgttgtaactgccttagtgacttatattcctttttgatgctttcctgaataaactgatagtactataagtatctcatttgggaaaagga |
9453184 |
T |
|
| Q |
101 |
atgaataagcaatgaaaattgaagaaagtatttagcttagtatagaagctttaatttacaaaccttatttctctttgtcactctcacaaggatacacaat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9453183 |
ttgaataagaaatgaaaattgaagaaagtatttagcttagtgtagcagctttaatttacaaaccttattactctttgtcactctcacaaggatacacaat |
9453084 |
T |
|
| Q |
201 |
cccttttcattaagctactattaagatcctatcgttttcctcccagtta |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9453083 |
tccttttcattaagctactattaagatcctatcgtttgcctcccagtta |
9453035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 37684661 - 37684925
Alignment:
| Q |
1 |
ttactactttctgttgtaactgcattagtgacttatattcctttgttatgctttcctgaatatactgatagtactataagtatctcatttgggaaaagga |
100 |
Q |
| |
|
|||||||||| || ||||||||| |||||| |||| |||||||| |||||||| | ||||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
37684661 |
ttactactttatgctgtaactgccttagtggcttaaattccttttttatgcttacatgaatgtactgatagtactataagtactccttttgggaaaagga |
37684760 |
T |
|
| Q |
101 |
atgaataagcaatgaaaattgaagaaagtatttagcttagtatagaagctttaatttacaaaccttat-ttctctttgtcactctcacaaggatacacaa |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||| ||||||||||||| ||||||||| |
|
|
| T |
37684761 |
atgaataagcaataaaaattgaagaaagtatttagcttagtatagcagctttagtttacaaaccttatctactctctgtcactctcacactgatacacaa |
37684860 |
T |
|
| Q |
200 |
tcccttttcattaagctactattaagatcctatcgttttcctcccagttagtgtcataatacatc |
264 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||| | |||| ||||||| ||| |||||||| |
|
|
| T |
37684861 |
ttcctttacattaagctactattaagatcatatcgtatgcctcacagttagcatcacaatacatc |
37684925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 38944522 - 38944784
Alignment:
| Q |
1 |
ttactactttctgttgtaactgcattagtgacttatattcctttgttatgctttcctgaatatactgatagtactataagtatctcatttgggaaaagga |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||| |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
38944522 |
ttactgctttctgttgtaactgccttagtgacttagattccttttcgatgctttcatgaatgtaccgatagtactataagtatcccatttgggaaa-gga |
38944620 |
T |
|
| Q |
101 |
atgaataagcaatgaaaattgaagaaagtatttagcttagtatagaagctttaatttacaaaccttatttctctttgtcactctcacaaggatacacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
38944621 |
atgaataagcaatgaaaattgaagcaagtatttagcttagtatagcagctttaatttacaaaccttattactctatgtcactctcacactgatacacaaa |
38944720 |
T |
|
| Q |
201 |
cccttttcattaagctactattaagatcctatcgttttcctcccagttagtgtcataatacatc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||| |
|
|
| T |
38944721 |
tccttttcattaagctactattaagatcctattgtttccctcacagttagtgtcacaatacatc |
38944784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 7499102 - 7498834
Alignment:
| Q |
1 |
ttactactttctgttgtaactgcattagtgacttatattcctttgttatgctttcctgaatatactgata--gtactataagtatctcatttgggaaaag |
98 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||| |||||||| | |||||||||||||| ||||||| |||||||||||| | | ||| ||||||| |
|
|
| T |
7499102 |
ttactactttatgttgtaactgccttagtggcttaaattcctttttaatgctttcctgaatgcactgatatagtactataagtaccccttttaggaaaag |
7499003 |
T |
|
| Q |
99 |
gaatgaataagcaatgaaaattgaagaaagtatttagcttagtatagaagctttaatttacaaaccttattt-ctctttgtcactctcacaaggatacac |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
7499002 |
gaatgaataagcaatgaaaattgaagaaagtatttagcttagtatagcagctgtagtttacaaaccttatttactctctgtcactctcacactgatacat |
7498903 |
T |
|
| Q |
198 |
aatcccttttcattaagctactattaagatcctatcgttttcctcccagttagtgtcataatacatcgt |
266 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||| | |||| |||||| ||| |||||||||| |
|
|
| T |
7498902 |
aattccttttcattaagctactattaagatcttatcgtatgcctcatagttagcatcacaatacatcgt |
7498834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 21545788 - 21545849
Alignment:
| Q |
205 |
tttcattaagctactattaagatcctatcgttttcctcccagttagtgtcataatacatcgt |
266 |
Q |
| |
|
||||||||||||||||||||||||| || |||| |||| ||||||||| || | |||||||| |
|
|
| T |
21545788 |
tttcattaagctactattaagatcccattgtttgcctcacagttagtgccacattacatcgt |
21545849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 21545716 - 21545755
Alignment:
| Q |
5 |
tactttctgttgtaactgcattagtgacttatattccttt |
44 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
21545716 |
tactttctgttgtaactgccttagtggcttatattccttt |
21545755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 18329081 - 18329273
Alignment:
| Q |
69 |
tagtactataagtatctcatttgggaaaaggaatgaataagcaatgaaaattgaagaaagtatttagcttagtatagaagctttaatttacaaaccttat |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18329081 |
tagtactataagtatcccatttgggaaa-ggaatgaataagcaatgaaaattgaagcaagtatttagcttagtatagcagctttaatttacaaaccttat |
18329179 |
T |
|
| Q |
169 |
ttctctttgtcactctcacaaggatacacaatcccttttcattaagctactattaagatcctatcgttttcctcccagttagtgtcataatacatc |
264 |
Q |
| |
|
| |||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
18329180 |
tactctctgtcactctcacactgatacacaaatccttttcattaag--actattaagatcctatcgtttccctcacagttagtgtcacaatacatc |
18329273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University