View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_high_18 (Length: 262)
Name: NF21287_high_18
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 6094660 - 6094416
Alignment:
| Q |
20 |
aaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc------------------tttc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6094660 |
aaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatcaggtactagcatacctcttttc |
6094561 |
T |
|
| Q |
102 |
gtagttttttagtaatgttggatttcaatacaaatgagaaa-actatattgaattttgtgagattttgatatcctttattgaagctcatgcacaaaattg |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094560 |
gtagttttttagtaatgttggatttcaaaacaaatgagaaagactatattgaattttgtgagattttgatatcctttattgaagctcatgcacaaaattg |
6094461 |
T |
|
| Q |
201 |
tccattttagttttcctataaaaatgaatcaagtagagggaaatt |
245 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
6094460 |
tccattttggttttcctataaagatgaatcaagtagagggaaatt |
6094416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 44188508 - 44188255
Alignment:
| Q |
11 |
caaaggagcaaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc------------- |
97 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| | |||||| ||||||||||| ||||| |
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| T |
44188508 |
caaaggagcaaatccaagcaaaattgttgaacagacaaattgctgctatgcgaagtgaataggctttgatttatgcatcaatacatcaggtactaaaata |
44188409 |
T |
|
| Q |
98 |
-----tttcgtagttttttagtaatgttggatttcaatacaaatgagaaa-actatattgaattttgtgagattttgatatcctttattgaagctcatgc |
191 |
Q |
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| T |
44188408 |
cctcttttcgtagttttttagtaatgtaggatttcaatacaaatgagaaagactatattgaattttgtgagattttgatatcctttattgaagctcatgc |
44188309 |
T |
|
| Q |
192 |
acaaaattgtccattttagttttcctataaaaatgaatcaagtagagggaaatt |
245 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
44188308 |
acaaaattgtccattttggttttcctataaaaatgaatcaattagagggaaatt |
44188255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 32727635 - 32727382
Alignment:
| Q |
11 |
caaaggagcaaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc------------- |
97 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||| | |||||| ||||||||||| ||||| |
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| T |
32727635 |
caaaggagcaaatccaagcaaaattgtttaacagacaaattgctgctatgcgaagtgaataggctttgatttatgcatcaatacatcaggtactaaaata |
32727536 |
T |
|
| Q |
98 |
-----tttcgtagttttttagtaatgttggatttcaatacaaatgagaaa-actatattgaattttgtgagattttgatatcctttattgaagctcatgc |
191 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727535 |
cctcttttcgtagttttttagtaatgtaggatttcaatacaaatgagaaagactatattgaattttgtgagattttgatatcctttattgaagctcatgc |
32727436 |
T |
|
| Q |
192 |
acaaaattgtccattttagttttcctataaaaatgaatcaagtagagggaaatt |
245 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
32727435 |
acaaaattgtccattttggttttcctataaaaatgaatcaattagagggaaatt |
32727382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 43095574 - 43095660
Alignment:
| Q |
11 |
caaaggagcaaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatc |
97 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43095574 |
caaaggagcaaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatc |
43095660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 43095684 - 43095724
Alignment:
| Q |
103 |
tagttttttagtaatgttggatttcaatacaaatgagaaaa |
143 |
Q |
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|||| ||||||||||| || ||||||||||||||||||||| |
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| T |
43095684 |
tagtattttagtaatgctgaatttcaatacaaatgagaaaa |
43095724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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