View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_high_23 (Length: 242)
Name: NF21287_high_23
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_23 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 1412427 - 1412666
Alignment:
| Q |
3 |
cataggatatgtaatatttggacccttttcaactaggttcaatgtttatcttcaaggtttcttatgtatccttcatgttcctctcgagacaaattaagga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1412427 |
cataggatatgtaatatttggacccttttcaactaggttcaatgtttatcttcaaggtttcttatgtatccttcatgttcctctcgagacaaattaagga |
1412526 |
T |
|
| Q |
103 |
agaaaagaaaaagccgcattgttaaacaaattgaaaaggaagttcgaaggattctttcttcgaataaagatatttcatttgtccttcaaccaacttcact |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1412527 |
agaaaagaaaaagccaaattgttaaacaaattgaaaaggaagttcgaaggattctttcttcgaataaagatatttcatttgtctttcaaccaacttcact |
1412626 |
T |
|
| Q |
203 |
tttgactcaaactccttcacgcattcttcaatttgtttct |
242 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
1412627 |
tttgactcaaactcctccacgcgttcttcaatttgtttct |
1412666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University