View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_high_26 (Length: 235)
Name: NF21287_high_26
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5035731 - 5035945
Alignment:
| Q |
1 |
gagaccttattctgcgggggttatcggtgaaacctagattcccatcaggacgaggaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagat |
100 |
Q |
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||||| ||||||||||||||| ||||| |||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
5035731 |
gagactttattctgcgggggtgatcggcaaaacctagattcccattaggacgaagaagtttgaatgtgttgttctcctcgtcgttgaggaatttgaagat |
5035830 |
T |
|
| Q |
101 |
gtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttcctttcttagggttttcctctgctgctgct |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||| ||||||| |
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| T |
5035831 |
gttttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttccca---------tttttcgtttcttagggttttcctctgttgctgct |
5035921 |
T |
|
| Q |
201 |
attttatctgcttcctcttccgcc |
224 |
Q |
| |
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||||| |||||||||||| ||||| |
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| T |
5035922 |
attttctctgcttcctctgccgcc |
5035945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 2525895 - 2526003
Alignment:
| Q |
30 |
aaacctagattcccatcaggacgaggaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttg |
129 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
2525895 |
aaacctatattcccatcaagacgaagaaggttgaaggtgttgttgtcctcgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatg |
2525994 |
T |
|
| Q |
130 |
aacgtgttg |
138 |
Q |
| |
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||||||||| |
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| T |
2525995 |
aacgtgttg |
2526003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 2536654 - 2536801
Alignment:
| Q |
55 |
gaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgc |
154 |
Q |
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||||| ||||||||||| | ||||||| |||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
2536654 |
gaaggctgaaggtgttgctgtcctcgtggttgagaaatttgaagatgtattcccataactcctctggtaaatatgaacgtgttg---gtgttgctgttga |
2536750 |
T |
|
| Q |
155 |
catttttgttctttttcctttcttagggttttcctctgctgctgctatttt |
205 |
Q |
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| T |
2536751 |
aaattttgttctttttcgtttcctagggtttttcactgctgcttctatttt |
2536801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 2486430 - 2486547
Alignment:
| Q |
81 |
tcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttcctttcttag |
180 |
Q |
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|||||||||||||| ||||| | |||||||| |||||||| |||| || | |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2486430 |
tcgttgaggaatttaaagattcgctcccataattcctctgggaaatacgagcatgttgcttctgttgctgttgccatttttgttctttttcgtttcttat |
2486529 |
T |
|
| Q |
181 |
ggttttcctctgctgctg |
198 |
Q |
| |
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|||||||| |||| |||| |
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| T |
2486530 |
ggttttccgctgcggctg |
2486547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 2491241 - 2491320
Alignment:
| Q |
59 |
gttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttg |
138 |
Q |
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||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||||| ||||||||||| |
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| T |
2491241 |
gttgaagatgttgttgtcctcgtcgttcaggaatttgaggatgtgttcccataacttctctggtaaacatgaacgtgttg |
2491320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 2625348 - 2625296
Alignment:
| Q |
80 |
gtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaac |
132 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
2625348 |
gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac |
2625296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 2519366 - 2519473
Alignment:
| Q |
76 |
cctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttccttt |
175 |
Q |
| |
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|||||||||||||||| |||| ||| | |||||||| ||||| ||||||| ||||| || || || ||||| ||||||||||||||||||| ||| |
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| T |
2519366 |
cctcgtcgttgaggaacttgacaatgcgctcccataactcctccggtaaatatgaacatgatg---ttgctgctgctgccatttttgttctttttggttt |
2519462 |
T |
|
| Q |
176 |
cttagggtttt |
186 |
Q |
| |
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||||||||||| |
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| T |
2519463 |
cttagggtttt |
2519473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 2467679 - 2467738
Alignment:
| Q |
80 |
gtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgc |
139 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||| |||||||| ||||| |||||| |
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| T |
2467679 |
gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc |
2467738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 5102005 - 5101944
Alignment:
| Q |
78 |
tcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgc |
139 |
Q |
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|||||||||||||||||||||||| | |||||||| || || ||||||| ||||| |||||| |
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| T |
5102005 |
tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgc |
5101944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 2547613 - 2547655
Alignment:
| Q |
84 |
ttgaggaatttgaagatgtgttcccataaatcctctggtaaat |
126 |
Q |
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|||||||||||||||||||| |||||||| || |||||||||| |
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| T |
2547613 |
ttgaggaatttgaagatgtgctcccataactcatctggtaaat |
2547655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 2380097 - 2380052
Alignment:
| Q |
87 |
aggaatttgaagatgtgttcccataaatcctctggtaaatttgaac |
132 |
Q |
| |
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|||||||||| ||||| ||||||||| || |||||||||||||||| |
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| T |
2380097 |
aggaatttgatgatgtattcccataactcatctggtaaatttgaac |
2380052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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