View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_high_29 (Length: 227)
Name: NF21287_high_29
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 37949895 - 37949700
Alignment:
| Q |
15 |
cagaacaactaatttcacatcattaatcttgtcaagctagttaactttgattttaattttatttgtataacagacatttggtagatgctgttaaatgagt |
114 |
Q |
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| T |
37949895 |
cagaacaactaatttcacatcattgatcttgtcaagctagttaactttgattttaattttatttgtataacagacatttggtagatgctgttaaatgagt |
37949796 |
T |
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| Q |
115 |
ttgaatttcatctcaaaagctagttcaatggataagggtgtccaaacatatttatgcatctaatggcccagaaacttgagcaacgtgggactctaaac |
212 |
Q |
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| T |
37949795 |
ttgaatttcatctcaaaagctagttcaatggataagg--gtccaaacatatttatgcatctaacggcccagaaacctgagcaacctgggactctaaac |
37949700 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 33408183 - 33408244
Alignment:
| Q |
103 |
tgttaaatgagtttgaatttcatctcaaaagctagttcaatggataagggtgtccaaacata |
164 |
Q |
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| T |
33408183 |
tgttaaatgagtttgaatctcatcccaaaagttagctcaaatggtaacggtgtccaaacata |
33408244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 41470225 - 41470189
Alignment:
| Q |
122 |
tcatctcaaaagctagttcaatggataagggtgtcca |
158 |
Q |
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| T |
41470225 |
tcatctcaaaagctagttcaaaggatgagggtgtcca |
41470189 |
T |
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