View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_high_4 (Length: 548)
Name: NF21287_high_4
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 7958380 - 7958626
Alignment:
| Q |
11 |
cagagagtagtatcttgggtcaagaaacaagtttactcaaaagaaaacctgttaatgcttcatcaactcgctctgcatcatgttctgggaaatcatccaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7958380 |
cagagagtagtatcttgggtcaagaaacaagtttactcaaaagaaaacctgttaatgcttcatcaactcgctctgcatcatgttctgggaaatcatccaa |
7958479 |
T |
|
| Q |
111 |
cggtggaggaaactgcacatcatcatcatcatcttcaagaggaatgcagtttaggaagctatctggatgttatgaatgtcacatgatcgttgaccctagc |
210 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7958480 |
cggtggaggaaactaca---catcatcatcatcttcaagaggaatgcagtttaggaagctatctggatgttatgaatgtcacatgatcgttgaccctagc |
7958576 |
T |
|
| Q |
211 |
aggttaacataatgtttttgctctcttttcactgaattctagattataat |
260 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7958577 |
aggttaacataatgtttttgttctcttttcactgaattctagattataat |
7958626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 368 - 532
Target Start/End: Original strand, 7958738 - 7958902
Alignment:
| Q |
368 |
tctgatatatgcatggtcaaagtacacacaattattgtagaactaatttaccttggtgtgaaatatccaatatcttactttgtaaaaaatttaccattca |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7958738 |
tctgatatatgcatggtcaaagtacacacaattattgtagaactaatttaccttggtgtgaaatatccaatatcttactttgtaaaaaatttaccattca |
7958837 |
T |
|
| Q |
468 |
attatagtgagttattttctccaaaccacatttttcaattataacttttaatagtactatagaag |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7958838 |
attatagtgagttattttctccaaaccacatttttcaattataacttttaatagtactatagaag |
7958902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University