View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_high_6 (Length: 534)
Name: NF21287_high_6
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Complemental strand, 33077018 - 33076513
Alignment:
| Q |
15 |
atttatcaatactagttcaagatttattatttaatnnnnnnnncagacatcaaatatcatatagaagttatttaataacattttatctgatgtttttgat |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33077018 |
atttatcaatactagttcaagatttattatttaataaaaaaaacagacatcaaatattatatagaagttatttaataacattttatctgatgtttttgat |
33076919 |
T |
|
| Q |
115 |
aaacagatacaataattgattgttcaaatcagaatctatggaaatagacaaaaaatatttttatggttttaaatatagcaaaagtttatcnnnnnnnngt |
214 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33076918 |
aaacagatacaataattgattgttcaaattagcatctatagaaatagacaaaaaatatttttatggttttaaatatagcaaaagtttatcaaaagaaagt |
33076819 |
T |
|
| Q |
215 |
tgatgtacttgacctaagataca--tgataactttctttgaacaattgcttatatttgagatcggatgcaaaaaatagtaaattaccataactcccacgg |
312 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33076818 |
tgatgtacttgacctaagatatacttgataactttctttgaacaattgcttatatttgagatcggatgcaaaaaatagtaaattaccataactcccacgg |
33076719 |
T |
|
| Q |
313 |
cagtgacgccaaaccacgagttagcaagagtagcaccagctaactgaagctcacccagatgaccgacaagcatgacagaaaccatagtgattgagttata |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |
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| T |
33076718 |
cagtgacgccaaaccacgagttagcaagagtagcaccagctaactgaagctcacccagatgaccaataagcatgacagaaaccaaagtgattgagttata |
33076619 |
T |
|
| Q |
413 |
taataatgttgtaagaattattggcagtgaaaacatgagttgatgtttggtttccttaatgtccaagattttgttccaccatttcttctccatttgaggt |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33076618 |
taataatgttgtaagaattattggcagtgaaaacatgagttgatgtttggtttccttaatgtccaagattttgttccaccatttcttctccatttcaggt |
33076519 |
T |
|
| Q |
513 |
tctgtg |
518 |
Q |
| |
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|||||| |
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|
| T |
33076518 |
tctgtg |
33076513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 226 - 518
Target Start/End: Complemental strand, 33068463 - 33068170
Alignment:
| Q |
226 |
acctaagatacatgataactttctttgaacaa-ttgcttatatttgagatcggatgcaaaaaatagtaaattaccataactcccacggcagtgacgccaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||| || ||||||||||| |||| |
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| T |
33068463 |
acctaagatacatgataactttctttgaacaaattgcttatatccgagaccggatgttaaaaatagtaaattaccataaccccgacggcagtgacaccaa |
33068364 |
T |
|
| Q |
325 |
accacgagttagcaagagtagcaccagctaactgaagctcacccagatgaccgacaagcatgacagaaaccatagtgattgagttatataataatgttgt |
424 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||| |||||||| |||||| |
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| T |
33068363 |
accacgagttagcaagagtagcaccggctaactgaagctcaccaagatgaccaacaagcatgacagaaaccaaagtaattgagtaatataatattgttgt |
33068264 |
T |
|
| Q |
425 |
aagaattattggcagtgaaaacatgagttgatgtttggtttccttaatgtccaagattttgttccaccatttcttctccatttgaggttctgtg |
518 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33068263 |
aagaattattggcagtgcaaacatgagttgatgtttggcttccttaatgtccaagattttgttccaccatttcttctccatttcaggttctgtg |
33068170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 324 - 518
Target Start/End: Complemental strand, 33086389 - 33086195
Alignment:
| Q |
324 |
aaccacgagttagcaagagtagcaccagctaactgaagctcacccagatgaccgacaagcatgacagaaaccatagtgattgagttatataataatgttg |
423 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| |||||| ||| ||| ||||| ||| |
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|
| T |
33086389 |
aaccatgagttggcaagagtagcacctgctaactgaaggtcaccaagatgaccaacaagcatgacagaaaccaaagtgatcaagtaataaaataaatttg |
33086290 |
T |
|
| Q |
424 |
taagaattattggcagtgaaaacatgagttgatgtttggtttccttaatgtccaagattttgttccaccatttcttctccatttgaggttctgtg |
518 |
Q |
| |
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||| ||| ||||| | ||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
33086289 |
taaaaatcattggtaatgaaaacatgagttgatgttttgcttcctcaatgtccaagattttattccaccatttcttctccatttcaggttctgtg |
33086195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 293 - 498
Target Start/End: Complemental strand, 33060272 - 33060067
Alignment:
| Q |
293 |
aattaccataactcccacggcagtgacgccaaaccacgagttagcaagagtagcaccagctaactgaagctcacccagatgaccgacaagcatgacagaa |
392 |
Q |
| |
|
||||||||||||| | ||| ||||||| | |||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
33060272 |
aattaccataactgctacgccagtgacactaaaccaagaattagcaagagtagcaccagctaactgaagctcaccaagatgaccaacaagcatgacagaa |
33060173 |
T |
|
| Q |
393 |
accatagtgattgagttatataataatgttgtaagaattattggcagtgaaaacatgagttgatgtttggtttccttaatgtccaagattttgttccacc |
492 |
Q |
| |
|
|||| |||||| ||| ||| ||||| |||||| ||| ||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
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|
| T |
33060172 |
accaaagtgatcaagtaataaaataagtttgtaaaaatcattggtaatgaaaacatgagttgaattttggcttcctctatgtccaagattttgttccacc |
33060073 |
T |
|
| Q |
493 |
atttct |
498 |
Q |
| |
|
|||||| |
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|
| T |
33060072 |
atttct |
33060067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 293 - 507
Target Start/End: Complemental strand, 33046834 - 33046620
Alignment:
| Q |
293 |
aattaccataactcccacggcagtgacgccaaaccacgagttagcaagagtagcaccagctaactgaagctcacccagatgaccgacaagcatgacagaa |
392 |
Q |
| |
|
||||||||||||| | ||| ||||||| | |||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
33046834 |
aattaccataactgctacgccagtgacactaaaccaagaattagcaagagtagcaccagctaactgaagctcaccaagatgaccaacaagcatgacagaa |
33046735 |
T |
|
| Q |
393 |
accatagtgattgagttatataataatgttgtaagaattattggcagtgaaaacatgagttgatgtttggtttccttaatgtccaagattttgttccacc |
492 |
Q |
| |
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|||| || || ||| ||| ||||| |||||| ||| ||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
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|
| T |
33046734 |
accaatgtaatcaagtaataaaataagtttgtaaaaatcattggtaatgaaaacatgagttgaattttggcttcctctatgtccaagattttgttccacc |
33046635 |
T |
|
| Q |
493 |
atttcttctccattt |
507 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
33046634 |
atttattctccattt |
33046620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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