View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21287_high_7 (Length: 473)
Name: NF21287_high_7
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 17179785 - 17179868
Alignment:
| Q |
300 |
ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttagacacgagcttagttaaatta |
383 |
Q |
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| T |
17179785 |
ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttacacacgagcttagttaaatta |
17179868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 385 - 473
Target Start/End: Original strand, 17179970 - 17180058
Alignment:
| Q |
385 |
acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccgagaattatctacccacc |
473 |
Q |
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| T |
17179970 |
acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccgattattatttacccacc |
17180058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 17179671 - 17179748
Alignment:
| Q |
221 |
ggaggtttcttttcccacaaaaatggttggcgtaggtgacgtccacaaagaccagacacatgcacatgtttattgtat |
298 |
Q |
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| T |
17179671 |
ggaggtttcttttcccacaaaaatggttggtgtaggtgacgtccacaaagaccagacacatgcacatgtttattgtat |
17179748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 17184670 - 17184753
Alignment:
| Q |
212 |
ggaggttggggaggtttcttttcccacaaaaatggttggcgtaggtgacgtccacaaagaccagacacatgcacatgtttattg |
295 |
Q |
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| T |
17184670 |
ggaggatggggaggtttcatttcccacaaaaatggtgggcgtaggtgacgaccacgaagatcagacacatgaacttgtttattg |
17184753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17169503 - 17169543
Alignment:
| Q |
1 |
tgcaacaaaagaatccaaaacaaaatttgggataaatggtt |
41 |
Q |
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| T |
17169503 |
tgcagcaaaagaatccaaaacaaaaattgggataaatggtt |
17169543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 17169709 - 17169769
Alignment:
| Q |
187 |
caatagtgaaaattggagaacttaaggaggttggggaggtttcttttcccacaaaaatggt |
247 |
Q |
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| T |
17169709 |
caatagtgaaaataggattacttggggatgctggggaggtttcttttcccacaaaaatggt |
17169769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17179448 - 17179488
Alignment:
| Q |
1 |
tgcaacaaaagaatccaaaacaaaatttgggataaatggtt |
41 |
Q |
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| T |
17179448 |
tgcaacaaaagaatccaaaataaaaattgggataaatggtt |
17179488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 17174515 - 17174577
Alignment:
| Q |
185 |
ttcaatagtgaaaattggagaacttaaggaggttggggaggtttcttttcccacaaaaatggt |
247 |
Q |
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| T |
17174515 |
ttcaatagtgaaaattgatttacttggggatgctggggaggtttcttttcccacaaaaatggt |
17174577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17174311 - 17174351
Alignment:
| Q |
1 |
tgcaacaaaagaatccaaaacaaaatttgggataaatggtt |
41 |
Q |
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|||| |||||||||||||||||||| || |||||||||||| |
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| T |
17174311 |
tgcagcaaaagaatccaaaacaaaaatttggataaatggtt |
17174351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17184411 - 17184451
Alignment:
| Q |
1 |
tgcaacaaaagaatccaaaacaaaatttgggataaatggtt |
41 |
Q |
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| T |
17184411 |
tgcaacaaaagaatctaaaataaaaattgggataaatggtt |
17184451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 17188359 - 17188391
Alignment:
| Q |
385 |
acgagaaggatttaattcactaataagtatttt |
417 |
Q |
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| T |
17188359 |
acgagaaggattttattcactaataagtatttt |
17188391 |
T |
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