View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21287_high_9 (Length: 417)

Name: NF21287_high_9
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21287_high_9
NF21287_high_9
[»] chr2 (1 HSPs)
chr2 (11-318)||(36572026-36572330)
[»] chr6 (3 HSPs)
chr6 (214-317)||(1673663-1673766)
chr6 (214-293)||(31989384-31989463)
chr6 (246-293)||(32005886-32005933)
[»] chr5 (2 HSPs)
chr5 (217-317)||(31072187-31072285)
chr5 (242-297)||(39994975-39995030)
[»] scaffold0060 (1 HSPs)
scaffold0060 (214-285)||(54032-54103)
[»] chr1 (2 HSPs)
chr1 (214-286)||(28461129-28461201)
chr1 (217-276)||(3609312-3609371)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 36572026 - 36572330
Alignment:
Q  11 atcatcacaaagggtattcacaaaagttccttttttattgcaaaggaaactcataataatacaatctggagaaaaatgaaagttgcacctaagaaataga 110  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36572026 atcatcacaa-gggtattcacaaaagttccttttttattgcaaaggaaactcataataatacaatctggagaaaaatgaaagttgcacctaagaaataga 36572124  T
Q  111 tgccctcgtcaatatataagtaatatcgtatcataatttagcccgtaaaaacaatttaaaagttgttgtattaagattttgagtataagaagnnnnnnnn 210  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||            
T  36572125 tgcccttgtcaatatataagtaatatcgtatcataatttagctcgtaaaaacaatttaaaagttgttgtattaagattttgagtataagaag--aaaaaa 36572222  T
Q  211 nncgataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatag 310  Q
      ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36572223 aacgataaaagagttttataactcaagtgaaagtaaaatttattgaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatag 36572322  T
Q  311 agttcaat 318  Q
    ||||||||    
T  36572323 agttcaat 36572330  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 1673766 - 1673663
Alignment:
Q  214 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatagagt 313  Q
    |||||||||  |||||| ||||| |||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||| ||||  ||||||||| ||    
T  1673766 gataaaagaactttatagctcaaatgaaagtaaaatttattggaaattatattgatgaaaagatggtgatttgtgtacataatacttctatttatagcgt 1673667  T
Q  314 tcaa 317  Q
    ||||    
T  1673666 tcaa 1673663  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 31989463 - 31989384
Alignment:
Q  214 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacat 293  Q
    |||||||||| || ||| ||||| ||||||||| |||||||||||||||||  ||||||||||| |||||||| ||||||    
T  31989463 gataaaagagcttaatagctcaaatgaaagtaatatttatagaaaattataccgatcaaaagatggtgatttgagtacat 31989384  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 32005933 - 32005886
Alignment:
Q  246 aaatttatagaaaattatattgatcaaaagatagtgatttgtgtacat 293  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  32005933 aaatttatagaaaattatattggtcaaaagatggtgatttgagtacat 32005886  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 31072187 - 31072285
Alignment:
Q  217 aaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatagagttca 316  Q
    ||||||| |||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||    
T  31072187 aaaagagctttatagctcaaatgaaagttaaattcatagaaacttatattgatcaaaagatggtgatttgtctacataatactc--atttatagagttca 31072284  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 39995030 - 39994975
Alignment:
Q  242 agtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagta 297  Q
    ||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||    
T  39995030 agtaaaattcatagaaaattatattgatcaaaagatggtaatttgagtacacagta 39994975  T

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Target: scaffold0060 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 54032 - 54103
Alignment:
Q  214 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgattt 285  Q
    ||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||| |||||| || |||||||    
T  54032 gataaaagagtttaatagctcaaatgaaagtaatatttatagaaaattatattggtcaaaatatggtgattt 54103  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 28461201 - 28461129
Alignment:
Q  214 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttg 286  Q
    |||||||||  || ||||| |||||| |||||||||| ||||||||||||||||||||||| ||||| |||||    
T  28461201 gataaaagaacttaataacacaagtggaagtaaaattcatagaaaattatattgatcaaaacatagtaatttg 28461129  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 3609312 - 3609371
Alignment:
Q  217 aaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaaga 276  Q
    ||||||| ||||||| |||||||||||||| ||  ||| |||||||||||||||||||||    
T  3609312 aaaagagctttataaatcaagtgaaagtaagatacataaaaaattatattgatcaaaaga 3609371  T

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