View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_low_1 (Length: 634)
Name: NF21287_low_1
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 11 - 618
Target Start/End: Complemental strand, 15422836 - 15422229
Alignment:
| Q |
11 |
cagagattaacatatgaactaagttctaactgagataggtaggcattatgcaataatgtagaattttaaataaggataactttggtttatgattaaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
15422836 |
cagagattaacatatgaactaagttctaactgagattggtaggcattacgcagtaacgtagaattttaaataaggataattttggtttatgattaaattt |
15422737 |
T |
|
| Q |
111 |
taaaagcatttgagtgtaactagatatttttgggtgttggtagaaaaaatctaaaatgaaagatgtacaatatgataagaaagagcaagagatcaaaaac |
210 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15422736 |
taaacgcatttgagtgtaactaaatatttttgggtgttggtagaaaaaatctaaaatgaaagatgtacaatatgataagaaagagcaagagatcaaaaac |
15422637 |
T |
|
| Q |
211 |
atacatgtaagattttgaatgtgagatatttttggccaatcctcacatgttttccttttacaccatttctccaactcaggacaattatgaatatacaaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15422636 |
atacatgtaagattttgaatgtgagatatttttggccaatcctcacatgtttcccttttacaccatttctccaactcaggacaattatgaatatacaaac |
15422537 |
T |
|
| Q |
311 |
ttttcagattggtaaggctttgaatgctctccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagcaaaataaggtttcctaaaga |
410 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
15422536 |
ttttcagatcggtaaggctttgaatgctcgccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagtgaaataaggtttcctaaaga |
15422437 |
T |
|
| Q |
411 |
gtctggtaaggatgtcaggtttggaagatcaatcaaacttaactcttgaagggcagtcacatgttgtaaatcctcacccaaaccttctattactgagcaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15422436 |
gtctggtaaggatgtcaggtttggaagatcaatcaaacttaactcttgaagggcagtcacatgttgtaaatcctcacccaaaccttctattactgagcaa |
15422337 |
T |
|
| Q |
511 |
ccatcaaatatagatgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcagccaaacaaatatagatgttgt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15422336 |
tcatcaaatatagatgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcagccaaacaaatatagatgttgt |
15422237 |
T |
|
| Q |
611 |
agagcttt |
618 |
Q |
| |
|
|||||||| |
|
|
| T |
15422236 |
agagcttt |
15422229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 198 - 439
Target Start/End: Complemental strand, 15431193 - 15430952
Alignment:
| Q |
198 |
agagatcaaaaacatacatgtaagattttgaatgtgagatatttttggccaatcctcacatgttttccttttacaccatttctccaactcaggacaatta |
297 |
Q |
| |
|
||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||| |||||| | |
|
|
| T |
15431193 |
agagatccaaaacatacctcgaagatattgaatgtgagatatttttggccaatcctcacctgtttcccttttacaccgtttctccagctcatgacaatca |
15431094 |
T |
|
| Q |
298 |
tgaatatacaaacttttcagattggtaaggctttgaatgctctccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagcaaaataa |
397 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| || | |||| ||| || ||| |
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|
| T |
15431093 |
caaatatccaaacttttcagagcagtaaggctttgaatgcttgccggaagacaaatcaacttcggacatttataaatttctagtccttgcagcgaactaa |
15430994 |
T |
|
| Q |
398 |
ggtttcctaaagagtctggtaaggatgtcaggtttggaagat |
439 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
15430993 |
ggtttcctaaagagtctgataaggatatcaggtttggaagat |
15430952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 198 - 501
Target Start/End: Original strand, 15081815 - 15082118
Alignment:
| Q |
198 |
agagatcaaaaacatac-atgtaagattttgaatgtgagatatttttggccaatcctcacatgttttccttttacaccatttctccaactcaggacaatt |
296 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
15081815 |
agagatccaaaacataccatg-aagattttgaatgtgagatatttttggccaatcctcgcctgtttcccttttacaccgtttctccaactcaggacaacc |
15081913 |
T |
|
| Q |
297 |
atgaatatacaaacttttcagattggtaaggctttgaatgctctccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagcaaaata |
396 |
Q |
| |
|
| |||| |||||| || ||| | |||||||||||||||| ||||||||||||||||||||||||| | ||||| || || |||||| || | |
|
|
| T |
15081914 |
acaaatactcaaactcttaagagcagaaaggctttgaatgctcgtcggaagacaaatcaacttcggacaatcccgaattcctagtttttgaagtgaacaa |
15082013 |
T |
|
| Q |
397 |
aggtttcctaaagagtctggtaaggatgtcaggtttggaagatcaatcaaacttaactcttgaagggcagtcacatgttgtaaatcctcacccaaacctt |
496 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |||||||||| | ||| |||| |||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
15082014 |
agttttcctaaagagtcaggtaaggatgtcaagtttggaagacacaacaatgataacgattgaagggaagtcacgtgttgtaagtcctcacccaaacctt |
15082113 |
T |
|
| Q |
497 |
ctatt |
501 |
Q |
| |
|
||||| |
|
|
| T |
15082114 |
ctatt |
15082118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 524 - 618
Target Start/End: Original strand, 15082524 - 15082618
Alignment:
| Q |
524 |
atgctcaaagtcctcaatgaagtcatcttccctatattgggaggtaaacttgataagctgaggcagccaaacaaatatagatgttgtagagcttt |
618 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15082524 |
atgctcaaagtcctcagggaagtcaagttccctatattgggaggtaaacttgataatctgaagcagccaaacaaatatagatgttgtagagcttt |
15082618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 511
Target Start/End: Complemental strand, 15430923 - 15430808
Alignment:
| Q |
396 |
aaggtttcctaaagagtctggtaaggatgtcaggtttggaagatcaatcaaacttaactcttgaagggcagtcacatgttgtaaatcctcacccaaacct |
495 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
15430923 |
aaggtttcctaaagagtctggtaaggttgtcaggtttggaagattccccaatgttaaccattgaagggcagtcacatgttgtaaagtctcacccaaaact |
15430824 |
T |
|
| Q |
496 |
tctattactgagcaac |
511 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
15430823 |
tctatttctgagcaac |
15430808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 225 - 511
Target Start/End: Original strand, 15345297 - 15345583
Alignment:
| Q |
225 |
ttgaatgtgagatatttttggccaatcctcacatgttttccttttacaccatttctccaactcaggacaattatgaatatacaaacttttcagattggta |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||| |||| | ||| | | |||| |||| ||||||| ||| |
|
|
| T |
15345297 |
ttgaatgtgagctatttttggccaatcctcacctgttttctctttacaccgtttctctaacttattgcaactgtaaatactcaaatgtttcagagcagta |
15345396 |
T |
|
| Q |
325 |
aggctttgaatgctctccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagcaaaataaggtttcctaaagagtctggtaaggatg |
424 |
Q |
| |
|
|||| |||||||||| ||||| || ||| ||| ||||| | |||| ||||||||||||||||| | ||||||||||| |||| |||| ||||| |
|
|
| T |
15345397 |
aggcattgaatgctcatgggaaggcacgtcagctttggacactgagaaatatttaattcttgaagcaaacttaggtttcctaaccagtcaggtatggatg |
15345496 |
T |
|
| Q |
425 |
tcaggtttggaagatcaatcaaacttaactcttgaagggcagtcacatgttgtaaatcctcacccaaaccttctattactgagcaac |
511 |
Q |
| |
|
|| |||||||||||| ||| | | | |||||||| ||||| |||||||||| |||| |||| |||||||| |||| |||| |
|
|
| T |
15345497 |
caagatttggaagatcacacaatgtcagcgattgaagggaagtcatatgttgtaaactctcatgcaaaacttctatttctgaacaac |
15345583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 439
Target Start/End: Original strand, 16412523 - 16412656
Alignment:
| Q |
306 |
caaacttttcagattggtaaggctttgaatgctctccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagcaaaataaggtttcct |
405 |
Q |
| |
|
|||| |||||||| | ||||||| |||||||||| ||||||||| | | ||| |||||| ||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
16412523 |
caaatttttcagactagtaaggcattgaatgctcatcggaagacatgtaagctttggacaatgcagaatgtctaattcttgaagcaaacctaggtttcct |
16412622 |
T |
|
| Q |
406 |
aaagagtctggtaaggatgtcaggtttggaagat |
439 |
Q |
| |
|
|| |||| |||||||||| ||| |||||||||| |
|
|
| T |
16412623 |
aaccagtcaggtaaggatgccagatttggaagat |
16412656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 480
Target Start/End: Original strand, 15352709 - 15352957
Alignment:
| Q |
232 |
tgagatatttttggccaatcctcacatgttttccttttacaccatttctccaactcaggacaattatgaatatacaaacttttcagattggtaaggcttt |
331 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||| |||||| | || | | |||||| ||| || ||| | ||||||||| ||| ||||||| || |
|
|
| T |
15352709 |
tgagctatttttggccaatcctcacctgtgttctctttacatcgttcccctaactcactgcaaccataaatttccaaacttttaagaccagtaaggcatt |
15352808 |
T |
|
| Q |
332 |
gaatgctctccggaagacaaatcaacttcggacaacgcaaaattcttaattcttgaagcaaaataaggtttcctaaagagtctggtaaggatgtcaggtt |
431 |
Q |
| |
|
|||||||| ||||||||| ||| ||| ||||| | |||| | |||||||||||| ||| | ||||||||||| |||| |||| ||||| ||||| |
|
|
| T |
15352809 |
gaatgctcgtcggaagacacgtcagctttggacactgagaaatacataattcttgaagtaaacttaggtttcctaaccagtcaggtagggatgctaggtt |
15352908 |
T |
|
| Q |
432 |
tggaagatcaatcaaacttaactcttgaagggcagtcacatgttgtaaa |
480 |
Q |
| |
|
|||||||| | |||| | ||| |||||||| ||||| |||||||||| |
|
|
| T |
15352909 |
tggaagataactcaatgtcaacgattgaagggaagtcatatgttgtaaa |
15352957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 15319379 - 15319444
Alignment:
| Q |
222 |
attttgaatgtgagatatttttggccaatcctcacatgttttccttttacaccatttctccaactc |
287 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||||| | ||| ||| | |||||||||||| |
|
|
| T |
15319379 |
attttgaacatgagctatttttggccaatcctcacctgtttccttttcacatcgtttctccaactc |
15319444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 15319479 - 15319523
Alignment:
| Q |
322 |
gtaaggctttgaatgctctccggaagacaaatcaacttcggacaa |
366 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
15319479 |
gtaaggctttgaatgctcatcggaagacatgtcaacttcggacaa |
15319523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 558
Target Start/End: Original strand, 15320439 - 15320479
Alignment:
| Q |
518 |
atatagatgctcaaagtcctcaatgaagtcatcttccctat |
558 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15320439 |
atatacatgctcaaagtcctcaaggaagtcaacttccctat |
15320479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 27324562 - 27324626
Alignment:
| Q |
81 |
taaggataactttggt-ttatgattaaattttaaaagcatttgagtgtaactagatatttttggg |
144 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||| | ||||| |||||||| |||||||||||| |
|
|
| T |
27324562 |
taaggataattttggtattatgaataaattttaattgaatttgggtgtaacttgatatttttggg |
27324626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 28359357 - 28359421
Alignment:
| Q |
81 |
taaggataactttggt-ttatgattaaattttaaaagcatttgagtgtaactagatatttttggg |
144 |
Q |
| |
|
||||||||| |||| | |||||| ||||||||||| | ||||| |||||||| |||||||||||| |
|
|
| T |
28359357 |
taaggataattttgatattatgaataaattttaaatgaatttgggtgtaacttgatatttttggg |
28359421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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