View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21287_low_11 (Length: 368)
Name: NF21287_low_11
Description: NF21287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21287_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 23358720 - 23358487
Alignment:
| Q |
17 |
acaattgaatcaaacctttttagtacaataaaattatactagctgaatggttgaatcaaacctttctctaggaagttgaatacagtaaataaaatcaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23358720 |
acaattgaatcaaacctttttagtacaataaaattatactagctaaatggttgaatcaaacctttctctaggaagtttaatacagtaaataaaatcaaaa |
23358621 |
T |
|
| Q |
117 |
tatatatagttaattatatcaaatgattagtaaatacaattttgttgttgtaaaagagacttataaattattaaagtaaaaccagttcaacttcaaaata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23358620 |
tatatatagttaattatatcaaatgattagtaaatacaattttgttgttgtaaaagagacttataaattattaaagtaaaaccagttcaacttcaaaata |
23358521 |
T |
|
| Q |
217 |
ctattcccctctttgtgataattataacatttgc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23358520 |
ctattcccctctttgtgataattataacatttgc |
23358487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University